Lyun000517.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:1046598-1048391[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.017 0.24 12.1 0.1 1 21 61 81 61 82 0.95
2 17 9.7 1.4e+02 3.4 5.1 1 23 88 110 88 110 0.97
3 17 0.0018 0.025 15.1 3.3 1 23 167 189 167 189 0.98
4 17 0.00046 0.0066 17.0 4.0 1 23 194 216 194 216 0.99
5 17 0.012 0.18 12.5 0.7 1 23 221 243 221 243 0.98
6 17 0.0031 0.044 14.4 4.4 1 23 248 270 248 270 0.98
7 17 0.0032 0.045 14.3 3.5 1 23 275 297 275 297 0.96
8 17 0.14 2 9.1 0.7 1 23 302 324 302 324 0.97
9 17 0.0016 0.022 15.3 4.3 1 23 329 351 329 351 0.99
10 17 0.46 6.5 7.5 0.4 1 23 356 378 356 378 0.96
11 17 0.0061 0.086 13.4 2.1 1 23 383 405 383 405 0.98
12 17 0.0038 0.054 14.1 0.8 1 23 410 432 410 432 0.99
13 17 0.0037 0.053 14.1 1.6 1 23 437 459 437 459 0.99
14 17 0.0031 0.044 14.4 2.3 1 23 464 486 464 486 0.99
15 17 0.045 0.64 10.7 1.0 1 23 491 513 491 513 0.98
16 17 0.0017 0.025 15.2 3.7 1 23 518 540 518 540 0.98
17 17 0.21 3 8.6 2.5 1 23 545 567 545 567 0.98

Sequence Information

Coding Sequence
atGGATCTTGATTTTAATGAAACTTGCCTGATAAAAACCGAAACTGTAcaggaaacattttcaaattgtgaaaattatGAAGATTATGGGAATGAAGAATTGAAAAcggagaaatattttaaatgcgaAGAGGAGGATAATCTTGAGCTCACTAACGTATCTGTTGTACTCATTCAGcgatatatttgtaatgaatgtaattttattacaacaaagaAAGATTCTTTAGTACAACACttgaacattattaaaaatgttcacTATTTTTGCAAAGAATGTAATTTCAAAACCCGCTTTGCATGTTCCATAAAAGACCATTTCAGGATTCATAACGAGGTTGGTTGTAgacatattactaaaaaatgtaatatcaaGACGTCACAAATTTTCTCTTTAGCACTACAAAATGGAACCAAACGTATTTGTAAAGAAtctgattataaaacatcacagATATGGAGTCtaaaagaacatttaaaaattcatccaggtgatgaatacaagtgtaataaatgtgattataaaacacttagGAAACAGAACCTAAAGCGACATTTGCAAATTCATACTgatcatgaatataagtgtaaagaatgtgattataaaacacatagAAAATGGAATCTAAAggaccatttaaaaattcataatggtgatgaatataagtgtgatgaatgtgattataaaacagcatggaaacAGAATTTAAAGCAACATTTGACAATTCATAGTAATCatagatataaatgtaatgaatgtgattataaaacacatagGAAATGGAATCTGAAGGaccatttcaaaattcatactggtgagaAATGTAAGTGTAATGAGTGTGGTTATAAAACAGCAttgaaacagaatctaaagcgACATTTGACAAGTCATAGTgatcatgaatataagtgtaaggaatgtgattatacagCACAATGGAAACGGAGTCTAATggaccatttaaaaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaacacataggaaacagagtctaaaggaccatttaaaaattcatacgggtgatgaatataagtgtatcgaatgtgattataaaacaccatggcaAACGAACCTAAaggatcatttaaaaattcatactggtgatgaatttaaatgtaaggaatgtgattatacaaCACGATGGAAACGGAGTCTAAAggaccatttaaaaattcatacgggtgatgaatataagtgtaatgaatgtgattataaaacaccgtgGAAAACGAACTTAAaggatcatttaaaaattcatactggtgatgaatataaatgtaaggaatgtgattatacaaCACGATGGAAACGGAGTCTACAggaccatttaaaaattcatactggtgatgaatataagtgtaatgactGTAATTATACAACAcgatggaaacagagtctaaagaaccatttaaaaattcatacaggtgatgaatataagtgtaatgaatgtgattatagaacaCAATGGAAACAGAATTTAGAGGATCATTTAAAacttcatactggtgatgaatatgaatgtaaggaatgtgattataaaacacatagGAAACGGAATCTAAAgggtcatttaaaaattcatactggtgatgagtacaagtgtaaggaatgtaattataaaacagtgtggaaacattCCATAAAAAGACATATTGAAATTCATATGCGTGATAACATCCATAATCCTAAAAAATGTTGA
Protein Sequence
MDLDFNETCLIKTETVQETFSNCENYEDYGNEELKTEKYFKCEEEDNLELTNVSVVLIQRYICNECNFITTKKDSLVQHLNIIKNVHYFCKECNFKTRFACSIKDHFRIHNEVGCRHITKKCNIKTSQIFSLALQNGTKRICKESDYKTSQIWSLKEHLKIHPGDEYKCNKCDYKTLRKQNLKRHLQIHTDHEYKCKECDYKTHRKWNLKDHLKIHNGDEYKCDECDYKTAWKQNLKQHLTIHSNHRYKCNECDYKTHRKWNLKDHFKIHTGEKCKCNECGYKTALKQNLKRHLTSHSDHEYKCKECDYTAQWKRSLMDHLKIHTGDEYKCNECDYKTHRKQSLKDHLKIHTGDEYKCIECDYKTPWQTNLKDHLKIHTGDEFKCKECDYTTRWKRSLKDHLKIHTGDEYKCNECDYKTPWKTNLKDHLKIHTGDEYKCKECDYTTRWKRSLQDHLKIHTGDEYKCNDCNYTTRWKQSLKNHLKIHTGDEYKCNECDYRTQWKQNLEDHLKLHTGDEYECKECDYKTHRKRNLKGHLKIHTGDEYKCKECNYKTVWKHSIKRHIEIHMRDNIHNPKKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-