Lyun008908.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001557.1:187962-189485[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0034 0.049 14.2 2.5 1 23 131 153 131 153 0.98
2 13 0.045 0.64 10.7 0.9 1 23 158 180 158 180 0.98
3 13 0.62 8.8 7.1 3.3 1 23 185 207 185 207 0.98
4 13 3.8e-05 0.00054 20.4 1.5 1 23 212 234 212 234 0.99
5 13 8.1e-05 0.0011 19.4 2.1 1 23 239 261 239 261 0.99
6 13 0.91 13 6.6 5.1 2 23 267 288 266 288 0.96
7 13 0.00098 0.014 15.9 0.8 1 23 293 315 293 315 0.99
8 13 0.00015 0.0021 18.5 1.2 1 23 320 342 320 342 0.99
9 13 0.00017 0.0025 18.3 3.7 1 23 347 369 347 369 0.99
10 13 0.0052 0.074 13.7 2.5 1 23 374 396 374 396 0.98
11 13 0.056 0.8 10.4 0.8 1 23 401 423 401 423 0.98
12 13 0.016 0.23 12.1 0.4 1 23 428 450 428 450 0.98
13 13 1.1e-05 0.00016 22.1 3.2 1 23 455 477 455 477 0.99

Sequence Information

Coding Sequence
ATGGATATCGACTCGGTAGATTTTATTGAAAGTTATGCTATAAAAccagaagtgattttaacagagacATTTTCTCTTTGTGGAAAATACGAAGATTGGGGGTGTAGGGAATTGAAACGGGAGCCACTAGATTATGAAGAACTGCTTAAacctaaagaagaaaatgatgtgGCAAAACCCATAGATACACAAGATTTTTGCAATGActctaattttataacaattggaGAAAATTCTCTAATAGAACCTTTGAAAGTTAGTAAAAGCATTAAATACACTATAAACGAGAATACAAGGATTCACAATGATGGATATAATATTGGAGAATGTAAGACACCACAGATTTTCTCTCTGTCACCACAGTTGAAAACTCCAAGAAGTGGGAATGCATATGTTTGTAATCAATGTTTTTACACcacatttaacaaaaatgaactaaaaaaaCATGTGAAGATTCACAAAAGTACTGCATATAGTTGcgagaaatgtgattataatacacGTTGGAAAAGTTCCTTCACAGCACATGCAAAAATTCAttcaggtaatgaatataagtgtaaaaactgcgactataaaacagtgtggaaaaattgtctaatgcaacatgttaaaattcatacaagcgatgaatataagtgtaaagaatgtgattataaaactgtacgaaAAAGTTATCTAatacaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactgtacggaaaaataatttaaaggaacatgtcaaaattcattctggtgatgaatgtaagtgtaaagaatgcgattataaaactatatggCAATGTAATCTAaggcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtaattatgaaactgtatggaaaagtaatctaattaaacatcttaaaattcatacaggtgatgaatataagtgcaaagaatgtgattataaaacggtacggAAAATTCagctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtaaggaAAACTCATTtgaaggaacatgtaaaaattcacacgggcgatgaatataagtgtaaagaatgtgattataaaacggtatggaaaagtcatctaaaggaacatgtcaaaattcatacaggtgacgaatatataTGTAAACAGTGTAactataaaacggtatggaaaagtggtctaaagcaacatgttaaaattcataccggtgacaAATAtacgtgtaaagaatgtgattataaaagtGTATGGAAAAGTGATCTgctgcaacatgtcaaaattcatacaggtgacgaatataagtgtaaacagtgtaattataaaacggtacggaaaagtaatctaaagcaacatattaaaattcatactggtgacaaatgtaagtctaaaggaacatcttaa
Protein Sequence
MDIDSVDFIESYAIKPEVILTETFSLCGKYEDWGCRELKREPLDYEELLKPKEENDVAKPIDTQDFCNDSNFITIGENSLIEPLKVSKSIKYTINENTRIHNDGYNIGECKTPQIFSLSPQLKTPRSGNAYVCNQCFYTTFNKNELKKHVKIHKSTAYSCEKCDYNTRWKSSFTAHAKIHSGNEYKCKNCDYKTVWKNCLMQHVKIHTSDEYKCKECDYKTVRKSYLIQHVKIHTGDEYKCKECNYKTVRKNNLKEHVKIHSGDECKCKECDYKTIWQCNLRQHVKIHTGDKYKCKECNYETVWKSNLIKHLKIHTGDEYKCKECDYKTVRKIQLKEHVKIHTGDEYKCKECDYKTVRKTHLKEHVKIHTGDEYKCKECDYKTVWKSHLKEHVKIHTGDEYICKQCNYKTVWKSGLKQHVKIHTGDKYTCKECDYKSVWKSDLLQHVKIHTGDEYKCKQCNYKTVRKSNLKQHIKIHTGDKCKSKGTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-