Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002264.1:3053686-3067827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0019 0.027 15.0 0.5 1 22 67 88 67 88 0.96

2 15 3 42 5.0 1.6 5 23 176 194 174 194 0.96

3 15 0.0041 0.058 14.0 0.3 1 23 199 221 199 221 0.98

4 15 0.00061 0.0086 16.6 1.7 1 23 226 248 226 248 0.99

5 15 0.0037 0.053 14.1 2.4 1 23 253 275 253 275 0.98

6 15 0.0018 0.025 15.1 1.2 1 23 280 302 280 302 0.98

7 15 0.0014 0.019 15.5 0.8 1 23 307 329 307 329 0.99

8 15 0.00068 0.0097 16.4 0.8 1 23 334 356 334 356 0.98

9 15 0.012 0.17 12.6 0.5 1 23 361 383 361 383 0.98

10 15 0.0069 0.097 13.3 3.1 1 23 388 410 388 410 0.99

11 15 0.003 0.043 14.4 1.5 1 23 415 437 415 437 0.98

12 15 0.0044 0.062 13.9 0.7 1 23 442 464 442 464 0.98

13 15 0.042 0.59 10.8 0.5 1 23 469 491 469 491 0.98

14 15 0.14 2.1 9.1 3.1 1 23 496 518 496 518 0.98

15 15 0.0037 0.052 14.1 3.7 1 23 523 545 523 545 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0019	0.027	15.0	0.5	1	22	67	88	67	88	0.96
2	15	3	42	5.0	1.6	5	23	176	194	174	194	0.96
3	15	0.0041	0.058	14.0	0.3	1	23	199	221	199	221	0.98
4	15	0.00061	0.0086	16.6	1.7	1	23	226	248	226	248	0.99
5	15	0.0037	0.053	14.1	2.4	1	23	253	275	253	275	0.98
6	15	0.0018	0.025	15.1	1.2	1	23	280	302	280	302	0.98
7	15	0.0014	0.019	15.5	0.8	1	23	307	329	307	329	0.99
8	15	0.00068	0.0097	16.4	0.8	1	23	334	356	334	356	0.98
9	15	0.012	0.17	12.6	0.5	1	23	361	383	361	383	0.98
10	15	0.0069	0.097	13.3	3.1	1	23	388	410	388	410	0.99
11	15	0.003	0.043	14.4	1.5	1	23	415	437	415	437	0.98
12	15	0.0044	0.062	13.9	0.7	1	23	442	464	442	464	0.98
13	15	0.042	0.59	10.8	0.5	1	23	469	491	469	491	0.98
14	15	0.14	2.1	9.1	3.1	1	23	496	518	496	518	0.98
15	15	0.0037	0.052	14.1	3.7	1	23	523	545	523	545	0.99

Sequence Information

Coding Sequence: atggatgttgattctgttgaaagttgtgcaataaaatctggAGGAATTTTAAGACAAACGTTTTTACATTGTGGTGAAGATATagGTTGTGGAAGTGCTGAATTGAAAACAGAGTCCCTAGATTACAATGAACAATTTAAATGTAGGGAAGAAGATTCAGCAGAGTGCATGGACACACATGCTGCTCAGATGCAACAATATTactgtaatgaatgtaattttacaacaaCCGATGAAGATTCTCTAAAAGAACAtttgaaaactactaaaaatgttcaatatttttgtaaggaatgtaactttgCAACTCAATTACAATGCTCCGTAAAACAGCATTTCAGAATTCACAAAGGAGTAGCTGCTAAATATATTCAAGAATGTAGTTCTAACACACCATGGATTTTTTCTTTAGCACCACAGCTGAAAACTCCAAGAAGTGGtgacaaatatatttataatgaatGTAACACATTGATTAAAAACTGTCCTAGGAAACCTGTGAAAATTCTTAAGGGTActgaatttaaatgtaaatataaaacagcGCGGAAGAATTGTTTAAAgttacatgtcaaaattcacacaggtagTAAATatcagtgtaaagaatgtgattatgaagCAGTGCGAAAAGATAGtataaagcaacatgtcaaaattcacacaggtaattactataagtgtaatgaatgtgattttaaaacggtGTATGAACgcaatctaaagaaacatgtcaaaatccatAACGGTGATGAAcataagtgcaaggaatgtgattataaaacagggTATGAATggaatctaaagaaacatgtcaaaatccattctggtgatgaatataagtgcaaccaatgtgattataaaacagtacgaaaagATAGTATAAAGCAGCATGTCAATATTCACAcaagtaataaatataagtgtaaagaatgtgattatacaaCAGTGTGGAAAGAtgatctaaagaaacatgtcaaaatccatacaggtgatgaatataagtgcaacgAATGCGATTATAGAACAGTACGAAAAGATAGTATAAAACAGCATGTTAATATTCACACaggtaataaatataagtgtaaagaatgtgattatgaaacagtgtgggaaaataatctaaagcgccatgtcaaaattcacacaaatgacgaatataagtgtaataacTGTGATTTTAAAACGGTGCATGaacttaatttaaagaaacatgtcaaaatccatactggtgatgaatataagtgcagtgaatgtgattataaaacagtaagaaaaaatagtataaagcaacatgtcaaaattcacacaggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaagatagtctaaagaaacatgttaaaatccatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaaattGCACTAAAGAATCATGTcaaaatccatacaggtgatcaatataagtgtaaagaatgtgattataaaacaatttatgaaTGTCGTCTACGtgaacatgtcaaaatccattcaggtgatgaatataagtgcaatgaatgtgattataaaacagtacgaaaagATTGTAtgaagcaacatgtcaaaattcacacagGAGGTTCTGTTGGGCGGTGCTCTACCATTAGTTATAAAGCCAAGACAGCCAGCAATGAGAAAACCAACATGGTTGCAGAAATACTGGGTACTCGAACTAGTGCATCACCTGCACCCACACGACAACCTGCATTCCCTCGCAATACCTCTTTACGCAGCACATTTCATTTGGGACAAACAAGACCTAGGgaTATGGGTAGACTCGTGCCACTAAATAAACTTCGTAAGCGTAACAAGGCTTCAAAATCTAGAACTAAGGCTCACAAACAGAAAAAGAACATTGTATGTTTAGCAAGGGGAATTGTAGAAGATATTATTGATTACGTCCAAGAATCAGATGAAGAAGGTTCTATTAGactaaaaattttggaacttcTAAAAACTTCCTTTTTAGTAACCGGTTTAGGAGGGATCGCTTCCCAACATTTACCGCTCCACCGTCAGGTCTATACCGATTGGGATTGA
Protein Sequence: MDVDSVESCAIKSGGILRQTFLHCGEDIGCGSAELKTESLDYNEQFKCREEDSAECMDTHAAQMQQYYCNECNFTTTDEDSLKEHLKTTKNVQYFCKECNFATQLQCSVKQHFRIHKGVAAKYIQECSSNTPWIFSLAPQLKTPRSGDKYIYNECNTLIKNCPRKPVKILKGTEFKCKYKTARKNCLKLHVKIHTGSKYQCKECDYEAVRKDSIKQHVKIHTGNYYKCNECDFKTVYERNLKKHVKIHNGDEHKCKECDYKTGYEWNLKKHVKIHSGDEYKCNQCDYKTVRKDSIKQHVNIHTSNKYKCKECDYTTVWKDDLKKHVKIHTGDEYKCNECDYRTVRKDSIKQHVNIHTGNKYKCKECDYETVWENNLKRHVKIHTNDEYKCNNCDFKTVHELNLKKHVKIHTGDEYKCSECDYKTVRKNSIKQHVKIHTGDEYKCEECDYKTVWKDSLKKHVKIHTGDEYKCKECDYKTVWKIALKNHVKIHTGDQYKCKECDYKTIYECRLREHVKIHSGDEYKCNECDYKTVRKDCMKQHVKIHTGGSVGRCSTISYKAKTASNEKTNMVAEILGTRTSASPAPTRQPAFPRNTSLRSTFHLGQTRPRDMGRLVPLNKLRKRNKASKSRTKAHKQKKNIVCLARGIVEDIIDYVQESDEEGSIRLKILELLKTSFLVTGLGGIASQHLPLHRQVYTDWD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -