Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002119.1:3707353-3709422[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.6 37 5.2 1.7 1 21 66 86 66 87 0.93

2 17 0.00081 0.011 16.2 2.3 1 23 142 164 142 164 0.98

3 17 0.22 3.1 8.5 1.1 1 23 169 191 169 191 0.95

4 17 0.026 0.37 11.4 3.5 1 23 196 218 196 218 0.98

5 17 0.0002 0.0028 18.1 1.2 1 23 223 245 223 245 0.98

6 17 0.84 12 6.7 2.5 1 23 250 272 250 272 0.98

7 17 0.062 0.87 10.3 4.1 1 23 277 299 277 299 0.99

8 17 0.026 0.37 11.5 1.3 1 23 304 326 304 326 0.98

9 17 2e-05 0.00028 21.3 1.4 1 23 331 353 331 353 0.99

10 17 0.00036 0.0051 17.3 1.9 1 23 358 380 358 380 0.98

11 17 0.026 0.36 11.5 0.5 1 23 385 407 385 407 0.98

12 17 0.2 2.8 8.7 4.1 1 23 412 434 412 434 0.98

13 17 0.00033 0.0047 17.4 1.7 1 23 439 461 439 461 0.99

14 17 2.3e-05 0.00032 21.1 1.4 1 23 466 488 466 488 0.98

15 17 0.012 0.17 12.5 1.8 1 23 493 515 493 515 0.98

16 17 0.002 0.028 15.0 0.6 1 23 520 542 520 542 0.98

17 17 0.93 13 6.6 2.8 1 23 547 569 547 569 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.6	37	5.2	1.7	1	21	66	86	66	87	0.93
2	17	0.00081	0.011	16.2	2.3	1	23	142	164	142	164	0.98
3	17	0.22	3.1	8.5	1.1	1	23	169	191	169	191	0.95
4	17	0.026	0.37	11.4	3.5	1	23	196	218	196	218	0.98
5	17	0.0002	0.0028	18.1	1.2	1	23	223	245	223	245	0.98
6	17	0.84	12	6.7	2.5	1	23	250	272	250	272	0.98
7	17	0.062	0.87	10.3	4.1	1	23	277	299	277	299	0.99
8	17	0.026	0.37	11.5	1.3	1	23	304	326	304	326	0.98
9	17	2e-05	0.00028	21.3	1.4	1	23	331	353	331	353	0.99
10	17	0.00036	0.0051	17.3	1.9	1	23	358	380	358	380	0.98
11	17	0.026	0.36	11.5	0.5	1	23	385	407	385	407	0.98
12	17	0.2	2.8	8.7	4.1	1	23	412	434	412	434	0.98
13	17	0.00033	0.0047	17.4	1.7	1	23	439	461	439	461	0.99
14	17	2.3e-05	0.00032	21.1	1.4	1	23	466	488	466	488	0.98
15	17	0.012	0.17	12.5	1.8	1	23	493	515	493	515	0.98
16	17	0.002	0.028	15.0	0.6	1	23	520	542	520	542	0.98
17	17	0.93	13	6.6	2.8	1	23	547	569	547	569	0.96

Sequence Information

Coding Sequence: atggatGTTCACTCCGTTGAAAGTTCTGAAATCAAATCAGAAGTGACTTTAACACAAACATTTTCGTTTTGTGGgaaatatgaagatTGTGAGGTCCAAGAACTGAAAACAGAACCAGAGAATTATGACGAACCGTTTAAATATAAGGAATGTGATCCTGCAGAGCACATGGATGCACATATTGGTACAATACAACATTGTTgtaatgagtgtaattttaCGACAATGGAAAGAAattctctaatagaacatttgaaaattactagcaattttcaatatttttgtgagAAATGTAACTTTAAGACGCAGTTAGAATGTTCTAAAAAAGAGCATTTAAGAATTCACAATCTAGTAGATGATAAAAATGCCGAAGAGTGTAAATTTAAGACACTACAGCTTCACACCACAAAAAGCGTTAACAAATATATATGTAATGATTGTAACTATACctcattcaaaaaaaattatctaaggagacatattaaaattcatattggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaagaagtctaaaggaacatgagacaattcatactggtaatgaatataagtgtaagaaatgtgactataaaactctacggaaacagagtctaaagcaacatgtcaaaattcatacagGTGTCAAATatgaatgtaaagaatgtgattataaaacagtgcagaaaaatagtctaaagcaacatgtcaaaattcatacgggtgatgaatataaatgtaaagaatgtgaatataaaacagtatggaaatgtcttctaaaagaacatgtcaaaattcatgagggtggtgaatataagtgtaaagaatgtgattataaaacaacatggaaaagatgtctaaaagaacatattaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaaatgatctgaagcaacatgtcaaaattcatgcaggtgtcggatataagtgtgaagaatgcgattataaaacagtgaagaaaagtaatctaaagcagCATTTAAACATTCATGCAGTTGTCAAATatgaatgtaaagaatgtgattataaaacggtgcaggaaaataatctaaagcatcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaggtcttctaaaagaacatgtcaaaattcatacaggtggtgaatacaagtgtaaagaatgtgattataaaacaacatggaaaagatgtctaaaggaacatgtcaaaattcatataggtgacgaatataagtgtaaagaatgcgaatATAAAACAGTGCAGAGAAGAAATCTAaatcaacatgtcaaaattcatacaggtgtcaaatataagtgtaaagattgtgattataacaCAGTGCAGAAAAGAAATCTAAATAGACATGTCAACATTCATACAGgtgtgaaatataaatgtgacgaatgtgattataaaacatcatggaaacagcatctaaatgtacatgtaaaaattcatattaatgataaatataaatgtaaggaatgtgactatagaGCAGTGAGGGAGCAACAATTAAAAGCACATAGCAAAAtccacactggtgatgaatataagtgtaatgaatgtgactataaaacactaTGGAAACAGAACCTAAGGATACATGTAAAAACTCATACtgatgataaatataagtTCATGAAATTCATACCAGTCGGtagtaaacaatttaaaaatggagTAGAAGTTGGTTATAATAATGTAGGGGATCAAATTATACAGTTATGTTCAAACTATTGTTATAGTCGCAACTTCCACAATAACCACAACAATGGTGGCtga
Protein Sequence: MDVHSVESSEIKSEVTLTQTFSFCGKYEDCEVQELKTEPENYDEPFKYKECDPAEHMDAHIGTIQHCCNECNFTTMERNSLIEHLKITSNFQYFCEKCNFKTQLECSKKEHLRIHNLVDDKNAEECKFKTLQLHTTKSVNKYICNDCNYTSFKKNYLRRHIKIHIGDEYKCKECDYKTIWKRSLKEHETIHTGNEYKCKKCDYKTLRKQSLKQHVKIHTGVKYECKECDYKTVQKNSLKQHVKIHTGDEYKCKECEYKTVWKCLLKEHVKIHEGGEYKCKECDYKTTWKRCLKEHIKIHTGDEYKCKECNYKTVWKNDLKQHVKIHAGVGYKCEECDYKTVKKSNLKQHLNIHAVVKYECKECDYKTVQENNLKHHVKIHTGDEYKCKECDYKTVWKGLLKEHVKIHTGGEYKCKECDYKTTWKRCLKEHVKIHIGDEYKCKECEYKTVQRRNLNQHVKIHTGVKYKCKDCDYNTVQKRNLNRHVNIHTGVKYKCDECDYKTSWKQHLNVHVKIHINDKYKCKECDYRAVREQQLKAHSKIHTGDEYKCNECDYKTLWKQNLRIHVKTHTDDKYKFMKFIPVGSKQFKNGVEVGYNNVGDQIIQLCSNYCYSRNFHNNHNNGG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -