Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001991.1:260253-284746[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.69 9.7 7.0 5.0 1 23 213 235 213 235 0.94

2 10 7.7 1.1e+02 3.7 4.3 1 23 246 268 246 268 0.98

3 10 0.006 0.084 13.5 1.7 5 23 311 330 307 330 0.90

4 10 1.3 18 6.2 0.1 1 20 385 404 385 406 0.82

5 10 1.3e-05 0.00019 21.8 1.7 2 23 434 455 433 455 0.97

6 10 8.4e-05 0.0012 19.3 0.9 1 23 461 483 461 483 0.98

7 10 5.9e-06 8.3e-05 22.9 0.4 1 23 489 512 489 512 0.96

8 10 3.3e-07 4.6e-06 26.9 0.7 1 23 518 540 518 540 0.99

9 10 7.9e-06 0.00011 22.5 4.3 1 23 546 568 546 568 0.99

10 10 1.1e-06 1.6e-05 25.2 1.3 1 23 574 596 574 596 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.69	9.7	7.0	5.0	1	23	213	235	213	235	0.94
2	10	7.7	1.1e+02	3.7	4.3	1	23	246	268	246	268	0.98
3	10	0.006	0.084	13.5	1.7	5	23	311	330	307	330	0.90
4	10	1.3	18	6.2	0.1	1	20	385	404	385	406	0.82
5	10	1.3e-05	0.00019	21.8	1.7	2	23	434	455	433	455	0.97
6	10	8.4e-05	0.0012	19.3	0.9	1	23	461	483	461	483	0.98
7	10	5.9e-06	8.3e-05	22.9	0.4	1	23	489	512	489	512	0.96
8	10	3.3e-07	4.6e-06	26.9	0.7	1	23	518	540	518	540	0.99
9	10	7.9e-06	0.00011	22.5	4.3	1	23	546	568	546	568	0.99
10	10	1.1e-06	1.6e-05	25.2	1.3	1	23	574	596	574	596	0.97

Sequence Information

Coding Sequence: atggaaaacaccGAATCAAATCAAGAATTGCTGGAAAACGTTACGATATCGGATGTTGGAAGTTCCCAATACATGATACAAAGGATGGCAGTCGATAATTCGCAATTACTTAATGCCGAATTGCTTTCGCAACACGGTGGGCTGGTTGTTGATTTAGCAGCTGGTGACTTCATTCCAGTTAATTATCCTTCAGAGGATTTGTTAAATCAAGACTTAACCGAGGAAGACAGAAACTTAGCCGCAGCTCTAGTTGCAGTACAACTTAgccaacaacaaaaacaacaacaattgcAACATGATTCGAGCAATGCATTAAATCCATCATTGCCTGGGCTCGTTGCAAATTCAACAATAGGAGGTGTTCCTAAAGTTGAAATAAGTGaggaacaattaattttatcagacaAAACAACAAATTCCATCAATACGAGGTACTTACATATTGTTGCCAATGATAAcatatatGAAACATATAATGAACAAATTAAATCAGAAGATGACAGTGATGCTCCAGCAGATTTTAAAGACTCGGATGGAGAAAACAGATCAGGTAATAGATCATCTAGAAAAAGCTTACCTCATAAAAAACGTATATCCCGCAAACTGAAAAAAACCTGTGGGACTTTGCAGAAAGTCCATAAATGCAATCTATGTGAACAAACTTTTTCAAGTGAGGAATTTGTGCAACATCAGACAATGTGTCATACAACTATAACTCCTATCAATCCGTCACTTTTCAGTTGTCAATTGTGTCAGTCAGATTTTCAACATCAGTTGaccttttttgaacatttaaaaagtCATTACGAACCTTCAATTCAAGTGGAACCTACTACAACTGCTGAGGAAACTTTGAAAGAAGACTTAAAGATAGAATCAGATACTCCCAAAGAGTCTTTATTGTCATCATTACTTAATTTACACTGTATTGGGTGCAATAAAACGTTTAGAAGACAAAAAACCTATGAAGCACACGTTAGAGAAATGCACAGTAAAGTTGAACTTACAGAATTTAGTGAGCCAGAAGATCTTATGGCTGGTATAAATGTTGTGGTAGGAACTAACGAGCACAGCACTGATGAAGACAGTAAAAGTTGGGATGAAGAATTACATGCGACGGAAGAGGATTTACGAGAACTGGAAGCTCAAGATCATGTCTGTCACATATGTAAAGAACCATTTCCAATGCGCGCCATACTTTTACAACATTTAGTTACTTGTCGAACTTCTAATGATCAATCAGAAAACTCCATAACTAATGTGCCAAAAAAGAAACCTAGAAAGAAGATGGGAGAATTAAGTTGTACAGATTGCGACAAGGTTTTTGCACATCGAAATTCATTGATTTATCACATGAAAAGTCACACAGGAGATCGACCTCATCAATGTGAACAGTGTGGTAAAAGTTTTTTTGCTGGTAGTGCTTTAAAAGTTCATATGCGTTTACACTCAGGTGCTAAACCTTACAAATGTGAAGAATGTGGCAGAAACTTTCGTCAATGGGGAGATTTAAAATATCACACAATTTCGTTACATTCAGATCAAAAGCAGTACCAGTGTGAATATTGTGGGAAAGATTTTGCTAGAAAATATTCTTTAATAGTTCACAGAAGAATTCACACCGgagaaagaaattataaatgtgAATTTTGTGGGAAATGTTTTCGTGCATCTTCCTATTTACAAAATCATAGGCGAATTCACACAGGTGAAAAACCGCATCCTTGTGAAGTTTGTGGTAAACCATTTAGAGTTAGATCCGATATGAAACGTCACATGAAAACACATGGTCGTAGACGAATGACAAGGCCAACGCCACTTTCTCCACTGTTGGTTGTtacaaaagttgaaaaaattgaaaatgacgGGTTAATGATTGATTCAGATGAGGAAAGCAGTCAGAATCAAACACAGGAGAATGAATCTGCCGTTCAAGCTTTACAATACGAACAAGCACCATTAGAAACAGTTCGAGATGCAAGTACTCTgtaCACAAATGGTCATCAATTATTTGTACTATATACTGGTAGTCCACAAATGCGTTCAGTTGAAGTTACATCCAATTGGTCACAGTCTAGTTAA
Protein Sequence: MENTESNQELLENVTISDVGSSQYMIQRMAVDNSQLLNAELLSQHGGLVVDLAAGDFIPVNYPSEDLLNQDLTEEDRNLAAALVAVQLSQQQKQQQLQHDSSNALNPSLPGLVANSTIGGVPKVEISEEQLILSDKTTNSINTRYLHIVANDNIYETYNEQIKSEDDSDAPADFKDSDGENRSGNRSSRKSLPHKKRISRKLKKTCGTLQKVHKCNLCEQTFSSEEFVQHQTMCHTTITPINPSLFSCQLCQSDFQHQLTFFEHLKSHYEPSIQVEPTTTAEETLKEDLKIESDTPKESLLSSLLNLHCIGCNKTFRRQKTYEAHVREMHSKVELTEFSEPEDLMAGINVVVGTNEHSTDEDSKSWDEELHATEEDLRELEAQDHVCHICKEPFPMRAILLQHLVTCRTSNDQSENSITNVPKKKPRKKMGELSCTDCDKVFAHRNSLIYHMKSHTGDRPHQCEQCGKSFFAGSALKVHMRLHSGAKPYKCEECGRNFRQWGDLKYHTISLHSDQKQYQCEYCGKDFARKYSLIVHRRIHTGERNYKCEFCGKCFRASSYLQNHRRIHTGEKPHPCEVCGKPFRVRSDMKRHMKTHGRRRMTRPTPLSPLLVVTKVEKIENDGLMIDSDEESSQNQTQENESAVQALQYEQAPLETVRDASTLYTNGHQLFVLYTGSPQMRSVEVTSNWSQSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00153855;
90% Identity: -
80% Identity: -