Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000058.1:797108-798557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0072 0.1 13.2 0.8 1 23 91 113 91 113 0.98

2 14 0.0012 0.017 15.6 2.3 1 23 118 140 118 140 0.99

3 14 0.036 0.51 11.0 3.8 1 23 145 167 145 167 0.98

4 14 0.0057 0.081 13.5 0.7 1 23 172 194 172 194 0.98

5 14 0.0012 0.017 15.6 1.3 1 23 199 221 199 221 0.99

6 14 0.047 0.66 10.7 4.4 1 23 226 248 226 248 0.98

7 14 0.045 0.63 10.7 0.9 1 23 253 275 253 275 0.98

8 14 0.0018 0.025 15.1 2.0 1 23 280 302 280 302 0.99

9 14 0.0077 0.11 13.1 3.1 1 23 307 329 307 329 0.99

10 14 0.047 0.66 10.7 4.4 1 23 334 356 334 356 0.98

11 14 3.9e-05 0.00055 20.4 2.2 1 23 361 383 361 383 0.99

12 14 0.019 0.26 11.9 4.5 1 23 388 410 388 410 0.99

13 14 0.00012 0.0017 18.8 2.0 1 23 415 437 415 437 0.99

14 14 4.6e-05 0.00066 20.1 0.8 1 23 442 464 442 464 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0072	0.1	13.2	0.8	1	23	91	113	91	113	0.98
2	14	0.0012	0.017	15.6	2.3	1	23	118	140	118	140	0.99
3	14	0.036	0.51	11.0	3.8	1	23	145	167	145	167	0.98
4	14	0.0057	0.081	13.5	0.7	1	23	172	194	172	194	0.98
5	14	0.0012	0.017	15.6	1.3	1	23	199	221	199	221	0.99
6	14	0.047	0.66	10.7	4.4	1	23	226	248	226	248	0.98
7	14	0.045	0.63	10.7	0.9	1	23	253	275	253	275	0.98
8	14	0.0018	0.025	15.1	2.0	1	23	280	302	280	302	0.99
9	14	0.0077	0.11	13.1	3.1	1	23	307	329	307	329	0.99
10	14	0.047	0.66	10.7	4.4	1	23	334	356	334	356	0.98
11	14	3.9e-05	0.00055	20.4	2.2	1	23	361	383	361	383	0.99
12	14	0.019	0.26	11.9	4.5	1	23	388	410	388	410	0.99
13	14	0.00012	0.0017	18.8	2.0	1	23	415	437	415	437	0.99
14	14	4.6e-05	0.00066	20.1	0.8	1	23	442	464	442	464	0.99

Sequence Information

Coding Sequence: atGGATGTTGATTATAATGAAACTTATCTGATAAAATCCGAAACTGTACACGAAACATTTTCATATTGTGGAAATTATGAAGTTGATGTTAACATAGATTATGGGAATAAAGAATTCAAAACGGAGCCCGTagatataaaaacatattttaaatgcgAAGAAGAGAATAATCCAGTGGAGCTCTCCGATGTACATCCTGTGCCTGTACATCAATACCATCAACAGATACGGAGTCAAAAGGATCATTTGAAAACCCATACtggtaaaaaatataagtgtaaggagtgtgattataaaacacaatggaaagGGAATCTAAAGGTGCATTTACAAATTCATAGTgatcatgaatataagtgtaagcaatgtgattataaaacaaatcgGATACTGAAtctaaagaatcatttaaaaatccatactggtaTTGAATATAGGTGTaaggagtgtgattataaaacacattggAAAGAGAGTCTAAAGcgccatttaaaaattcatactggtgataaatataagtgtaaagattgtgattataaaactgtatggaaagcGAATCTAATGAACCATGTAAAACTCCAtactggcgatgaatataagtgcaaggagtgtgattataaaacacgatGGAAAGgaaatctaaaggaacatttaaaaattcatagtgatcacgaatataagtgtaaagactgtgattataaaacacattggaaacagaatctaaagacacatttaaaaattcatactggtattgaatataagtgtaaagagtgtgattataaaacacaatggacAGGGAATCtgaaggaacatttaaaaattcatagtgatcatgaatataaatgtaagcaatgtgattataaaacacaacaGGTACAGAATctaaataatcatttaaaaatccatactgctattgaatataagtgtaaagagtgtgaatATAAAACACACTTGAAAGggaatctaaaggaacatttaaaaattcatagtgatcatgaatataagtgtaaggactgtgattataaaacacattggaaacagaatctaaagacacatttaaaaattcatactggtattgaatataagtgcaaagactgtgattacaaaacatcaCAGAAATGGTATCTTAAGCAACATTTGCAAATTCATAGTgatcatgaatataagtgtagggaatgcgattataaaacacgtTGGAAACACAATCTaaagacacatttaaaaattcatactggtattgaatataagtgcaaggagtgtgattataaaacacgacGAAAATGGAGTCTAAagggacatttaaaaattcatagtgattgtgaatataagtgcaaggagTGTGGTTATAAAACACCAACAAAACAGAGTCTAGAGaatcatgtaaaaattcatactagtGATGAATAa
Protein Sequence: MDVDYNETYLIKSETVHETFSYCGNYEVDVNIDYGNKEFKTEPVDIKTYFKCEEENNPVELSDVHPVPVHQYHQQIRSQKDHLKTHTGKKYKCKECDYKTQWKGNLKVHLQIHSDHEYKCKQCDYKTNRILNLKNHLKIHTGIEYRCKECDYKTHWKESLKRHLKIHTGDKYKCKDCDYKTVWKANLMNHVKLHTGDEYKCKECDYKTRWKGNLKEHLKIHSDHEYKCKDCDYKTHWKQNLKTHLKIHTGIEYKCKECDYKTQWTGNLKEHLKIHSDHEYKCKQCDYKTQQVQNLNNHLKIHTAIEYKCKECEYKTHLKGNLKEHLKIHSDHEYKCKDCDYKTHWKQNLKTHLKIHTGIEYKCKDCDYKTSQKWYLKQHLQIHSDHEYKCRECDYKTRWKHNLKTHLKIHTGIEYKCKECDYKTRRKWSLKGHLKIHSDCEYKCKECGYKTPTKQSLENHVKIHTSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00855098;
90% Identity: -
80% Identity: -