Lyun003143.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000480.1:57400-61708[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.00011 0.0015 18.9 1.0 1 23 149 171 149 171 0.98
2 28 0.0036 0.052 14.2 1.6 1 23 176 198 176 198 0.99
3 28 0.0025 0.036 14.6 1.9 1 23 203 225 203 225 0.99
4 28 0.0007 0.0099 16.4 0.3 1 23 230 252 230 252 0.98
5 28 0.0037 0.053 14.1 2.0 1 23 257 279 257 279 0.99
6 28 0.21 3 8.6 4.8 1 23 284 306 284 306 0.99
7 28 0.38 5.3 7.8 3.0 1 23 311 333 311 333 0.98
8 28 0.00095 0.013 16.0 1.9 1 23 338 360 338 360 0.99
9 28 1.6 23 5.8 2.4 1 23 394 416 394 416 0.97
10 28 1.1 16 6.3 0.7 1 23 448 470 448 470 0.93
11 28 0.053 0.75 10.5 1.0 1 23 475 497 475 497 0.98
12 28 0.053 0.75 10.5 1.0 1 23 502 524 502 524 0.98
13 28 0.0031 0.044 14.4 2.6 1 23 529 551 529 551 0.99
14 28 0.59 8.3 7.2 4.8 1 23 556 578 556 578 0.97
15 28 0.04 0.56 10.9 4.1 1 23 583 605 583 605 0.97
16 28 0.028 0.39 11.4 2.5 1 23 610 632 610 632 0.98
17 28 0.14 2 9.2 3.3 1 23 639 661 639 661 0.98
18 28 1.1 16 6.3 4.2 1 23 668 690 668 690 0.97
19 28 0.044 0.63 10.7 3.2 1 23 695 717 695 717 0.98
20 28 0.14 2 9.2 3.3 1 23 724 746 724 746 0.98
21 28 0.35 5 7.9 4.1 1 23 751 773 751 773 0.97
22 28 0.04 0.56 10.9 4.1 1 23 778 800 778 800 0.97
23 28 0.35 5 7.9 4.1 1 23 805 827 805 827 0.97
24 28 0.042 0.6 10.8 2.4 1 23 832 854 832 854 0.98
25 28 0.028 0.39 11.4 2.5 1 23 859 881 859 881 0.98
26 28 0.042 0.6 10.8 2.4 1 23 886 908 886 908 0.98
27 28 0.079 1.1 9.9 2.2 1 23 913 935 913 935 0.98
28 28 0.028 0.39 11.4 2.5 1 23 940 962 940 962 0.98

Sequence Information

Coding Sequence
ATGGATATTAATTGTACTGAAAGTTGTACAATAAAAtctgaaattattttaacagaaacattttgtgGAAACTATGATGattgtggTAATGAAGAACTGAAAACGGAGCCAGTAGATTACAAAGAATTATTTAAGTGTAAGGAAGAAGACCCTGCAGAGCACATGGGTACATCTCCTGTCCAAATACAACAATGTTCTGGTAATGAGTTTAACTTTACAACAATGGAAAAAGATTCTCGCCTAGGAcctttaaaaactacaaaaaatattcagtatttttgtaaacaatgtAACTTTAGAACTCATTTGGAATGCTTCataaaaaagcatttgaaaattcacaAGGGTGTAGATGATACTTATATTagtaaggaatgtaattttagAATACCACAGAGTTTCTCTTTAGCACCACAtgtaaaaacttcaaaaagtaATGatgaatatatttgtaatgaatgtaattttaccacGTCGAAGAAAGAGTCTCTAAGGAGACATATGATAATCCATACAgttgatgaatacaagtgtaaagaatgtgattataaaacaaagtggaaacaacaattaaaagcgcacattaaaattcatactgttgatgaatataagtgtaaagaatgtggttataaaacagcatggaaatttaatctaaagaaacatcttaaaattcatacaggtgatgtatatcagtgtaaagaatgtgattataaaacagtaggGAAACAACAATTAAAAGCTCATATtgaaattcatagtggtgatgaatataagtgtaaggaatgcgattataaaacagtacatgaacttaaattaaaagcacatattaaaattcatactggtgatgaatataagtgtaaagaatgtagttataaaacagtgtggaaatgcAACCTAAAGaaacatcttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatgtggaaacatagtctaaaggaacacgtaaaaattcatacagatgagcaatataagtgcaaagaatgtgattatacaacagtgtggaaatataatctaaagaaacacctcaaaattcatacaggagaggaatataagtgtatagaatgtgattttaaaacagtgtggaaacaaaGCCTAagggaacatgtcaaaattcatacagctGACAATGACAAATATACATGTAgcaaatgtgattataaaacagtgtggaaacataGACTAATCaatcatgttaaaattcataaagataaagaatataagtgtatagaatgtgattataaaacgtcgtggaaacatagtctaaaggaacatttcaaacttcatacaggtgatgaatataagtgtaaagagtgcgATTACAAAACAGTGTGGAGAATTaggctaaaggaacatgtcaaaattcatacaggagagaaatataagtgtaaagaatgtgattataaaacaccatggaaacgtagtctaaaggaacacgtcaaaattcatacaggtgagaaatataagtgtaaagaatgtgattataaaacaccatggaaacgtagtctaaaggaacacgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattacaaaacaataattaaacataatctaaaggaacatgtcaaaattcatacaggtgacgaatacaagtgtaaagaatgtgattataaaacgtcgtggaaacatagtctaaaggaacatttcaaacttcatacaggtgaggaatataagtgtaaagattgtgattacaaaacaataattaaacataatctaaaggaacatttcaaacttcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaaggaacatgtcaaaattcatacagctGACAATGACAAATATACATGTAgcaaatgtgattataaaacgtcgtggaaacatagtctaaaggaacacgtcaaaattcatacagctGACAATGACAAATATACATGTAgcaaatgtgattataaaacagtgtggaaacataatctaaaggaacatttcaaacttcatacaggtgaggaatataagtgtaaagaatgtgattataaaacgtcgtggaaacatagtctaaaggaacacgtcaaaattcatacagctGACAATGACAAATATACATGTAgcaaatgtgattataaaacgtcgtggaaacatagtctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaaggaacatttcaaacttcatacaggtgaggaatataagtgtaaagattgtgattacaaaacaataattaaacataatctaaaggaacatttcaaacttcatacaggtgacgaatacaagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaaggaacatttcaaacttcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggagacataatctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggagacataatctaaaggaacatgtcaaaattcatacaggtgacgaatacaagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaagggacacgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacataatctaaaggaacatgtcaaaattcatacagAAAAGCAAAAGCGCGCAATAGAAAATGTAACTAAGCGCCTATTCTCTGCTGTCAATcccaagaagaaaaatttcaatgaaGTATACTCTTCAAACACCGACACAGAATATTCCGTTCATGGCAGTAGCTCCAATTTTGTGTATGACAGTGAAGAAAATACTCAAGACGAAGACATTGAAAACTTACAGCAGAACTCTAAAATGGTGATTCCGAATGACTATGCTGTAATTAAAGTTCAGGGTAAAACAAAGAATTCTTTCCGACACTATCTAGCTAAGATTATTTGTGTCTACCAGAATGGTTATCAAGGCGTATTTTACAAGCGTTTACCAAATTACAAGTTTTCAGAAACTAACGAAGAGTTCTTCATTGCTGATGAAgatattgttttgaaattgtCAAAACCTACTGAGATACACTCTGCTAGGTTTCATAATGTGATTGCTTTCACAGAAGATTTGACTACTTTTACCATGTATTAA
Protein Sequence
MDINCTESCTIKSEIILTETFCGNYDDCGNEELKTEPVDYKELFKCKEEDPAEHMGTSPVQIQQCSGNEFNFTTMEKDSRLGPLKTTKNIQYFCKQCNFRTHLECFIKKHLKIHKGVDDTYISKECNFRIPQSFSLAPHVKTSKSNDEYICNECNFTTSKKESLRRHMIIHTVDEYKCKECDYKTKWKQQLKAHIKIHTVDEYKCKECGYKTAWKFNLKKHLKIHTGDVYQCKECDYKTVGKQQLKAHIEIHSGDEYKCKECDYKTVHELKLKAHIKIHTGDEYKCKECSYKTVWKCNLKKHLKIHTGDEYKCKECDYKTMWKHSLKEHVKIHTDEQYKCKECDYTTVWKYNLKKHLKIHTGEEYKCIECDFKTVWKQSLREHVKIHTADNDKYTCSKCDYKTVWKHRLINHVKIHKDKEYKCIECDYKTSWKHSLKEHFKLHTGDEYKCKECDYKTVWRIRLKEHVKIHTGEKYKCKECDYKTPWKRSLKEHVKIHTGEKYKCKECDYKTPWKRSLKEHVKIHTGEEYKCKDCDYKTIIKHNLKEHVKIHTGDEYKCKECDYKTSWKHSLKEHFKLHTGEEYKCKDCDYKTIIKHNLKEHFKLHTGEEYKCKECDYKTVWKHNLKEHVKIHTADNDKYTCSKCDYKTSWKHSLKEHVKIHTADNDKYTCSKCDYKTVWKHNLKEHFKLHTGEEYKCKECDYKTSWKHSLKEHVKIHTADNDKYTCSKCDYKTSWKHSLKEHVKIHTGDEYKCKECDYKTVWKHNLKEHFKLHTGEEYKCKDCDYKTIIKHNLKEHFKLHTGDEYKCKECDYKTVWKHNLKEHFKLHTGEEYKCKECDYKTVWRHNLKEHVKIHTGEEYKCKECDYKTVWKHNLKEHVKIHTGEEYKCKECDYKTVWRHNLKEHVKIHTGDEYKCKECDYKTVWKHNLKGHVKIHTGEEYKCKECDYKTVWKHNLKEHVKIHTEKQKRAIENVTKRLFSAVNPKKKNFNEVYSSNTDTEYSVHGSSSNFVYDSEENTQDEDIENLQQNSKMVIPNDYAVIKVQGKTKNSFRHYLAKIICVYQNGYQGVFYKRLPNYKFSETNEEFFIADEDIVLKLSKPTEIHSARFHNVIAFTEDLTTFTMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-