Lyun007053.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:1877739-1886146[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 4.6 65 4.4 0.2 1 23 17 39 17 39 0.86
2 44 0.00072 0.01 16.4 0.9 1 21 49 69 49 70 0.96
3 44 0.19 2.8 8.7 0.2 5 23 80 98 79 98 0.95
4 44 6.8 97 3.9 1.3 1 23 103 125 103 125 0.97
5 44 7.8 1.1e+02 3.7 2.7 1 23 131 153 131 153 0.91
6 44 0.00071 0.01 16.4 3.2 1 23 157 179 157 179 0.99
7 44 0.099 1.4 9.6 0.9 1 23 223 245 223 245 0.98
8 44 0.21 3 8.6 0.6 1 23 250 272 250 272 0.98
9 44 5.5 79 4.1 0.2 1 23 277 299 277 299 0.84
10 44 6.8 97 3.9 1.3 1 23 339 361 339 361 0.97
11 44 7.8 1.1e+02 3.7 2.7 1 23 367 389 367 389 0.91
12 44 0.00071 0.01 16.4 3.2 1 23 393 415 393 415 0.99
13 44 7.4 1e+02 3.7 1.1 1 23 419 441 419 441 0.87
14 44 0.11 1.5 9.5 1.4 1 23 446 468 446 468 0.98
15 44 0.088 1.2 9.8 1.4 1 23 500 522 500 522 0.98
16 44 0.11 1.5 9.5 1.4 1 23 527 549 527 549 0.98
17 44 0.063 0.89 10.3 1.6 1 23 554 576 554 576 0.98
18 44 7.4 1e+02 3.7 1.1 1 23 581 603 581 603 0.87
19 44 0.11 1.5 9.5 1.4 1 23 608 630 608 630 0.98
20 44 0.22 3.1 8.6 1.0 1 23 635 657 635 657 0.98
21 44 1 15 6.4 0.2 1 23 662 684 662 684 0.91
22 44 0.019 0.27 11.9 0.8 1 23 689 711 689 711 0.99
23 44 0.081 1.1 9.9 0.9 1 23 716 738 716 738 0.98
24 44 1.5 22 5.9 0.2 1 23 743 765 743 765 0.91
25 44 0.11 1.5 9.5 1.4 1 23 782 804 782 804 0.98
26 44 7.2 1e+02 3.8 0.4 1 23 809 831 809 831 0.90
27 44 0.088 1.2 9.8 1.4 1 23 836 858 836 858 0.98
28 44 0.00015 0.0021 18.6 1.7 1 23 863 885 863 885 0.99
29 44 7.4 1e+02 3.7 1.1 1 23 890 912 890 912 0.87
30 44 0.019 0.27 11.9 0.8 1 23 950 972 950 972 0.99
31 44 0.081 1.1 9.9 0.9 1 23 977 999 977 999 0.98
32 44 7.4 1e+02 3.7 1.1 1 23 1004 1026 1004 1026 0.87
33 44 0.11 1.5 9.5 1.4 1 23 1031 1053 1031 1053 0.98
34 44 0.33 4.7 8.0 0.7 1 23 1058 1080 1058 1080 0.98
35 44 0.13 1.9 9.2 0.5 1 23 1181 1203 1181 1203 0.98
36 44 0.099 1.4 9.6 2.7 1 23 1208 1230 1208 1230 0.98
37 44 0.13 1.9 9.2 3.3 1 23 1235 1257 1235 1257 0.98
38 44 0.27 3.8 8.3 3.3 1 23 1290 1312 1290 1312 0.97
39 44 0.13 1.9 9.2 2.1 1 23 1317 1339 1317 1339 0.98
40 44 0.14 1.9 9.2 0.1 1 23 1344 1366 1344 1366 0.98
41 44 0.019 0.26 11.9 1.3 1 23 1371 1393 1371 1393 0.99
42 44 0.0079 0.11 13.1 2.2 1 23 1398 1420 1398 1420 0.99
43 44 1.2 17 6.3 1.3 1 23 1425 1447 1425 1447 0.98
44 44 0.0015 0.021 15.4 2.3 1 23 1452 1474 1452 1474 0.99

Sequence Information

Coding Sequence
atggaaacaagtttaaaagaacatgtgaaaattcatagtgataataaatatgaatgtaaggaatgtggttttaaaacagtatggaaacggAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgattataaaacagtgaggaaaagtagattaaaagaacacatgaaaattcagactggtgaggaatataagtctaacgaatgcgattataaaacagtgaggaaagataaactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATGTGAGAATTCATACTACTGAtcctgaatataaatgtaaggagtgtgattttaaaacactgtGGGAAGGAAACCTAAAAagacatgtgaaaattcatagtgatgaatataaatgtaaggaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATACTGATGATGAGtacaagtgtaaggaatgtaattataaaaacaccatggaaacaaagtctaaagtatggaaacggAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaaggaatgtggttttaaaacagtatggaaacagagtttaaaggaacatgtgaaaattcatagtgacaataaatatgagtgtaaggaatgtaattacaaaacaccatggaaacaaagtttaaaagaacatgtgaaaattcatagtgacaataaatatgagtgtaaggaatgtggttttaaaacagtatggaaacagAGTATAGAGAAACATGCCATAATTCATAGTGGTGTAATTCAAAGtggtaataaatataagtgtaacgaatgtgactataaaacagtgaggaaaatgaggaaagataaactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaatgaatgtattTATACAACACCATGGAAACATATGCTAAGACTACATGTGAGAATTCATACTACTGAtcctgaatataaatgtaaggagtgtgattttaaaacactgtGGGAAGGAAACCTAAAAagacatgtgaaaattcatagtgatgaatataaatgtaaggaatgtaattataaaacaaatcagAGACTGAGTCTAAAGATTCATATGAAAACTCATactgatgaatacaagtgtaatgaATGCAATTACAAAACTCTATGGAAACagagtttaaaggaacatgtgaaaattcatagtggtgatgaatataagtgtaaggaatgtaattataaaacaccttggaaaaaaagtctaaaagaacatgtgaaaattcatagtgacaataaatatgagtgtaaggaatgtagttttaaaacagtatggaaacggAGTATAGAGAATCATGcaaaaattcatattggtgctgaatataagtgtaaggaatgtaattacaaaacaccatggaaacaaagtttaaaagatcatttgaaaattcatagtgatgatgaatataagtgtaaggaatgtaattataaaacaccttggaaaaaaagtctaaaagaacatgtgaaaattcatagtgatgataaatataagtgtaaggaatgtgattataaaacagtatggaaacggAGTTTACAGAAACATGCAAACAGtcatagtggtgatgaatataagtgtaatgaatgcaaTTACAAAACTCTATGGAAACagagtttaaaggaacatgtgaaaattcatagtggtgatgaatataaatgtaaggaatgtaattataaaacaccttggaaaaaaagtctaaaagaacatgtgaaaattcatagtgacgataaatatgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTTTACAGAAACATGCAAACAGtcatagtggtgatgaatataagtgtaaggattgtgattataaaactgtgtggatAGCAAGCCTAAAAGGAcacgtgaaaattcatactgatgatgagtataagtgtaaggaatgtaattatagaacaccatggaaacaaagtctaaaTGTACATATGCAAATTCATAGTGACGATAAATAtgagtgtaaggaatgtgattataaaacagtatggaaacggAGTTTACAGAAACATGCAAACAGtcatagtggtgatgaatataagtgtaaggaatgtgattataaaactgtgtggatAGCAAGCCTAAAAGGACAcgtgaaaattcatagtggtgatgaatataatgaacatgtgaaaattcatagtggtgatgaatataagtgtaaggaatgtaattataaaacaccttggaaaaaaagtctaaaagaacatgtgaaaattcatagtgacaataaatatgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAATCATGcaaaaattcatattggtgctgaatataagtgtaaggaatgtaattacaaaacaccatggaaacaaagtttaaaagatcatttgaaaattcatagtgatgataaatataagtgtaaggaatgtgattataaaacaagttCGAGACCAAGTCTAAAGATTCATATGACCACCCATAGCgatgatgaatacaagtgtaacgAATGCAATTACAAAACTCTATGGAAACagagtttaaaggaacatgtgaaaattcatagtgacaataaatatgagtgtaaggaatgtgattttaaaacagattgtgattataaaactgtgtggatAGCAAGCCTAAAAGGAcacgtgaaaattcatactgatgatgagtataagtgtaaggaatgtaattatagaacaccatggaaacaaagtctaaaTGTACATATGCAAATTCATAGTGACGATAAATAtgagtgtaaggaatgtgattataaaacagtatggaaacggAGTTTACAGAAACATGCAAACAGtcatagtggtgatgaatataagtgtaatgaatgcaaTTACAAAACTCTATGGAAACagagtttaaaggaacatgtgaaaattcatagtggtgatgaatataaatgtaaggaatgtaattataaaacaccttggaaaaaaagtctaaaagaacatgtgaaaattcatagtgacgataaatatgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTTTACAGCAACACGCTAAAATTCATAGtgataatgaatataagtgtaatgaattttggATAATGGCCGAAAGTTATCCAGTAAAGTCAGAGGTGgttgtaaatgaaacattttcccATTGCGGAAAATATATAGattgtgagaatgaaaaattgaaaacggAGCCAGTAGATTTCGAAGAACCTTTTAAATGGGAAGTAGAGGATAATTTTGCGGATCACATCGATATATGTGGTTTATCCGGTGATGAACTTAAGGAATACGATTATAAGACAGTGTTGAAACGGAATCTACAGAAACATGTAACAATTCATACTAATGATCAATAtatgtgtaaggaatgtgagtataaaacaccatggaaacaaaatttaaatatgcatattaaaattcatagtgactgtaaatatgagtgtaaggaatgtaattacaaaacacgatggaaacagaatctaaaacaacatgtaaaatatcatactggtgatgaatataaatgtaaaaaatgtaattttaaaacagtatggaaaaaaaatctaaagaaacatgggagaattcatactgatgatgaatataagtgtaatgaatgtatttataaaacaccatggaaacaaagGCTAAgagaacatgtgaaaattcatagaaCTGATCctcaatataagtgtaaggagtgtgattataaaacgttaTGGAAAGATAACCTACAtagacatatgaaaattcatagtaatgatgaatataagtgtaagaaatgtaattataaaacaccatggaaacaaaatctaaaaatgcatgtgaaaattcatagtgacggtgaatatgagtgtaaagaatgtgattataaaacagcgtggAAAGGAAACCTAGAAggacatgtgaaaattcatagagacgatgaatataagtgtaaggaatgtaattacaaaacacCGTGGAAGCAGAGTCTGaaaatacatatgaaaattcatagtggtgatcaatataagtgcaaagtatgtgattataaaacaagttggaaacagagtctaaagactcatatgaaaattcatagtggtgatcaatataagtgtagggaatgtgactttaaaacagtgtggaaacaaaGGCTAAATgagcatatgaaaattcatattggtggtgaatataaatgtaaggaatgtaactataaaacagtgaggaaagatagactaaaggaacatttaaaaattcatactggtgatgaatataagtgtaaccaatgtatttataaaacaccatggaaacacaAGCTAAAAGAGCATGTGAGAACTCATACTACTGATCCTCTATAA
Protein Sequence
METSLKEHVKIHSDNKYECKECGFKTVWKRSIEKHAIIHSGVIQSGNKYKCNECDYKTVRKSRLKEHMKIQTGEEYKSNECDYKTVRKDKLKEHVKIHTGDEYKCNECIYTTPWKHMLRLHVRIHTTDPEYKCKECDFKTLWEGNLKRHVKIHSDEYKCKECNYKTNQRLSLKIHMKTHTDDEYKCKECNYKNTMETKSKVWKRSIEKHAIIHSGVIQSGNKYKCKECGFKTVWKQSLKEHVKIHSDNKYECKECNYKTPWKQSLKEHVKIHSDNKYECKECGFKTVWKQSIEKHAIIHSGVIQSGNKYKCNECDYKTVRKMRKDKLKEHVKIHTGDEYKCNECIYTTPWKHMLRLHVRIHTTDPEYKCKECDFKTLWEGNLKRHVKIHSDEYKCKECNYKTNQRLSLKIHMKTHTDEYKCNECNYKTLWKQSLKEHVKIHSGDEYKCKECNYKTPWKKSLKEHVKIHSDNKYECKECSFKTVWKRSIENHAKIHIGAEYKCKECNYKTPWKQSLKDHLKIHSDDEYKCKECNYKTPWKKSLKEHVKIHSDDKYKCKECDYKTVWKRSLQKHANSHSGDEYKCNECNYKTLWKQSLKEHVKIHSGDEYKCKECNYKTPWKKSLKEHVKIHSDDKYECKECDFKTVWKRSLQKHANSHSGDEYKCKDCDYKTVWIASLKGHVKIHTDDEYKCKECNYRTPWKQSLNVHMQIHSDDKYECKECDYKTVWKRSLQKHANSHSGDEYKCKECDYKTVWIASLKGHVKIHSGDEYNEHVKIHSGDEYKCKECNYKTPWKKSLKEHVKIHSDNKYECKECDFKTVWKRSIENHAKIHIGAEYKCKECNYKTPWKQSLKDHLKIHSDDKYKCKECDYKTSSRPSLKIHMTTHSDDEYKCNECNYKTLWKQSLKEHVKIHSDNKYECKECDFKTDCDYKTVWIASLKGHVKIHTDDEYKCKECNYRTPWKQSLNVHMQIHSDDKYECKECDYKTVWKRSLQKHANSHSGDEYKCNECNYKTLWKQSLKEHVKIHSGDEYKCKECNYKTPWKKSLKEHVKIHSDDKYECKECDFKTVWKRSLQQHAKIHSDNEYKCNEFWIMAESYPVKSEVVVNETFSHCGKYIDCENEKLKTEPVDFEEPFKWEVEDNFADHIDICGLSGDELKEYDYKTVLKRNLQKHVTIHTNDQYMCKECEYKTPWKQNLNMHIKIHSDCKYECKECNYKTRWKQNLKQHVKYHTGDEYKCKKCNFKTVWKKNLKKHGRIHTDDEYKCNECIYKTPWKQRLREHVKIHRTDPQYKCKECDYKTLWKDNLHRHMKIHSNDEYKCKKCNYKTPWKQNLKMHVKIHSDGEYECKECDYKTAWKGNLEGHVKIHRDDEYKCKECNYKTPWKQSLKIHMKIHSGDQYKCKVCDYKTSWKQSLKTHMKIHSGDQYKCRECDFKTVWKQRLNEHMKIHIGGEYKCKECNYKTVRKDRLKEHLKIHTGDEYKCNQCIYKTPWKHKLKEHVRTHTTDPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-