Lyun000021.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:316035-318807[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 4.3 61 4.5 1.4 1 23 165 187 165 187 0.89
2 19 0.0021 0.029 14.9 2.5 1 23 192 214 192 214 0.99
3 19 0.022 0.32 11.7 1.0 1 23 219 241 219 241 0.98
4 19 0.0045 0.064 13.9 0.8 1 23 246 268 246 268 0.98
5 19 0.00078 0.011 16.2 2.1 1 23 273 295 273 295 0.99
6 19 0.00021 0.003 18.1 1.8 1 23 300 322 300 322 0.97
7 19 0.012 0.17 12.5 0.9 1 23 327 349 327 349 0.99
8 19 0.036 0.51 11.0 1.9 1 23 354 376 354 376 0.97
9 19 0.0041 0.058 14.0 3.5 1 23 381 403 381 403 0.99
10 19 0.089 1.3 9.8 1.0 1 23 408 430 408 430 0.98
11 19 0.018 0.25 12.0 1.1 1 23 435 457 435 457 0.98
12 19 0.0015 0.021 15.4 1.1 1 23 462 484 462 484 0.98
13 19 1.3 18 6.1 4.1 1 23 489 511 489 511 0.97
14 19 0.0069 0.098 13.3 6.2 1 23 516 538 516 538 0.99
15 19 0.017 0.24 12.0 1.0 1 23 545 567 545 567 0.98
16 19 0.00062 0.0088 16.6 4.3 1 23 572 594 572 594 0.99
17 19 0.71 10 6.9 5.0 1 23 599 621 599 621 0.98
18 19 0.015 0.21 12.2 1.2 1 23 626 648 626 648 0.99
19 19 0.0052 0.073 13.7 2.9 1 23 653 675 653 675 0.98

Sequence Information

Coding Sequence
atggatgTCCATTCAATAGATAATTCTGCAATCAAATCCGAAGTGATTTTGACAGAAACATTCACGTTTTCTGGAAAATACGAAGattgtaAGAGTCCTGAACTAAAAATAGAATCAGCAGCTTATGaagatttgtttaaatgtaaagaagaaGATTCTGTAGGTGACGTTGACATACATACTGCTCCGATGCAATGTTTTGGTAAATCTAATTTTGCGACaatagaacatttaaaaattactaaaaatgattattattcctgtgaggaatgtaactttacaacgCATTTAGAATCTTCTATACAAGAAAATTCGAAAATTCACAGCGCAGTAGATGGTCAAtataatgttgaaaaatgtaattttaagtcgCCACAGATTCTCTCTTTATCACCAGAACTTGAATCTACAAGAATTCGCAATGAATCTAATGGTACCACATTGATCAAAAGTAATCTAACGAATCATAGAAAGATTCGTAAAGTTGGTGACTATACTTGTGAtaagtgtgattataaaacacagtggaAAGGTTACTTTACAGAACATGCAAAACTTCATGtaggtgatgagtataagtgtaaagaatgtgactataaaacaatgcaaaaaacccgactaaaggaacatctcagaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaacggtgtggaaaaatcaactaaaggaacatgttaaaattcacacaggtgatgaatataagtgtaaagactgtgattataaaacggtgtggaaaaataatctaacaCGACATGTTGAAATTCACACAAGTGACATATATAAGTgtcaagaatgtgattataaaacagtgcagaaaaCTTTTCTCCagcaacatctcaaaattcatacaggtaacaaATATGactgtaatgaatgtgattataaaacaaataggaaatatagtttaaagcaacatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattttaaaacgatATGGAAAATTAGTCTAAAGGCACACATCAAAACCCATTCAGGTGATAAACATAAGtgcaaagagtgtgattataaaacggcatGGAGAACTAATCTAAAGCGACATGTcgaaattcacacaggtgacaTATATAAGTgtcaagaatgtgattataaaacagtgcacaAAACGCTTCTCAAGtaccatgtcaaaattcatacagctaacaaatataaatgtgaagaatgtaattataaaacgccGTGGAAAAATCGTCTAAAACAACATATCAAagttcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcaactgaatcaacatgtcaaaattcatacaggtaacaaatatgagtgtaaagactgtgattataaaacagtgcagaaaactcgactaaaggaacatgtcaaaattcatactggtgaagaatataagtgtaaagattgtgattataaaacggtgtggaaaaGATGTTTCAAggagcatgtcaaaattcatacaggtgaagaatataagtgtaataactgtcactataaaacagtacagaaaaatcatctaaaggatcatgtcaaaattcacacaggtgcaGGTGAggaatacaagtgtaaagaatgtgattttaaaacggtgtggaaaagtagtttaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtactaACTGTGACTATAGAACAATACAGAAAAGTCATCTAAAgtatcatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacggtatggaaacattgtctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagcatggaaaagGTATCTAAtgcaacacatcaaaattcatacaggtgacaaatataagtgtaaagaatgtgactataaaacattgcggaaaaatcaactaaagaaACACgttaaaattcacacaggtaatgaataa
Protein Sequence
MDVHSIDNSAIKSEVILTETFTFSGKYEDCKSPELKIESAAYEDLFKCKEEDSVGDVDIHTAPMQCFGKSNFATIEHLKITKNDYYSCEECNFTTHLESSIQENSKIHSAVDGQYNVEKCNFKSPQILSLSPELESTRIRNESNGTTLIKSNLTNHRKIRKVGDYTCDKCDYKTQWKGYFTEHAKLHVGDEYKCKECDYKTMQKTRLKEHLRIHTGDEYKCKECDYKTVWKNQLKEHVKIHTGDEYKCKDCDYKTVWKNNLTRHVEIHTSDIYKCQECDYKTVQKTFLQQHLKIHTGNKYDCNECDYKTNRKYSLKQHVKIHTGDEYKCKECDFKTIWKISLKAHIKTHSGDKHKCKECDYKTAWRTNLKRHVEIHTGDIYKCQECDYKTVHKTLLKYHVKIHTANKYKCEECNYKTPWKNRLKQHIKVHTGDEYKCKECDYKTVWKNQLNQHVKIHTGNKYECKDCDYKTVQKTRLKEHVKIHTGEEYKCKDCDYKTVWKRCFKEHVKIHTGEEYKCNNCHYKTVQKNHLKDHVKIHTGAGEEYKCKECDFKTVWKSSLKEHVKIHTGEEYKCTNCDYRTIQKSHLKYHVKIHTGDEYKCKECDYKTVWKHCLKEHVKIHTGEEYKCKECDYKTAWKRYLMQHIKIHTGDKYKCKECDYKTLRKNQLKKHVKIHTGNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-