Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000835.1:671889-679081[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 1.6 23 5.8 1.7 1 23 99 121 99 121 0.93

2 27 0.3 4.2 8.1 1.1 1 23 126 148 126 148 0.97

3 27 0.6 8.5 7.2 0.6 1 23 153 175 153 175 0.95

4 27 0.0035 0.05 14.2 3.1 1 23 180 202 180 202 0.98

5 27 0.88 12 6.6 0.7 1 23 207 229 207 229 0.95

6 27 0.00064 0.0091 16.5 1.1 1 23 234 256 234 256 0.98

7 27 0.00064 0.009 16.5 2.1 1 23 261 283 261 283 0.99

8 27 4.9 69 4.3 0.2 1 23 288 310 288 310 0.92

9 27 0.00016 0.0022 18.4 2.1 1 23 315 337 315 337 0.99

10 27 0.0044 0.062 13.9 0.8 1 23 342 364 342 364 0.98

11 27 2 28 5.5 5.0 1 23 369 391 369 391 0.95

12 27 0.013 0.19 12.4 3.6 1 23 396 418 396 418 0.98

13 27 0.00051 0.0072 16.8 2.1 1 23 423 445 423 445 0.99

14 27 0.27 3.8 8.3 0.1 1 21 516 536 516 537 0.95

15 27 7.2 1e+02 3.8 0.5 7 23 610 626 604 626 0.79

16 27 0.21 2.9 8.6 0.7 1 23 631 653 631 653 0.98

17 27 0.18 2.6 8.8 0.6 1 23 658 680 658 680 0.97

18 27 0.00081 0.011 16.2 2.0 1 23 685 707 685 707 0.99

19 27 0.49 7 7.4 1.5 1 23 712 734 712 734 0.98

20 27 1.2e-05 0.00018 21.9 2.6 1 23 739 761 739 761 0.99

21 27 0.00074 0.01 16.3 3.6 1 23 766 788 766 788 0.98

22 27 0.39 5.5 7.8 5.1 1 23 793 815 793 815 0.98

23 27 0.2 2.9 8.7 0.5 1 23 820 842 820 842 0.97

24 27 0.2 2.8 8.7 4.9 1 23 847 869 847 869 0.96

25 27 1.7 24 5.7 3.7 1 23 874 896 874 896 0.96

26 27 8.7 1.2e+02 3.5 0.6 1 23 901 923 901 923 0.91

27 27 0.0027 0.038 14.6 3.1 1 21 928 948 928 949 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	1.6	23	5.8	1.7	1	23	99	121	99	121	0.93
2	27	0.3	4.2	8.1	1.1	1	23	126	148	126	148	0.97
3	27	0.6	8.5	7.2	0.6	1	23	153	175	153	175	0.95
4	27	0.0035	0.05	14.2	3.1	1	23	180	202	180	202	0.98
5	27	0.88	12	6.6	0.7	1	23	207	229	207	229	0.95
6	27	0.00064	0.0091	16.5	1.1	1	23	234	256	234	256	0.98
7	27	0.00064	0.009	16.5	2.1	1	23	261	283	261	283	0.99
8	27	4.9	69	4.3	0.2	1	23	288	310	288	310	0.92
9	27	0.00016	0.0022	18.4	2.1	1	23	315	337	315	337	0.99
10	27	0.0044	0.062	13.9	0.8	1	23	342	364	342	364	0.98
11	27	2	28	5.5	5.0	1	23	369	391	369	391	0.95
12	27	0.013	0.19	12.4	3.6	1	23	396	418	396	418	0.98
13	27	0.00051	0.0072	16.8	2.1	1	23	423	445	423	445	0.99
14	27	0.27	3.8	8.3	0.1	1	21	516	536	516	537	0.95
15	27	7.2	1e+02	3.8	0.5	7	23	610	626	604	626	0.79
16	27	0.21	2.9	8.6	0.7	1	23	631	653	631	653	0.98
17	27	0.18	2.6	8.8	0.6	1	23	658	680	658	680	0.97
18	27	0.00081	0.011	16.2	2.0	1	23	685	707	685	707	0.99
19	27	0.49	7	7.4	1.5	1	23	712	734	712	734	0.98
20	27	1.2e-05	0.00018	21.9	2.6	1	23	739	761	739	761	0.99
21	27	0.00074	0.01	16.3	3.6	1	23	766	788	766	788	0.98
22	27	0.39	5.5	7.8	5.1	1	23	793	815	793	815	0.98
23	27	0.2	2.9	8.7	0.5	1	23	820	842	820	842	0.97
24	27	0.2	2.8	8.7	4.9	1	23	847	869	847	869	0.96
25	27	1.7	24	5.7	3.7	1	23	874	896	874	896	0.96
26	27	8.7	1.2e+02	3.5	0.6	1	23	901	923	901	923	0.91
27	27	0.0027	0.038	14.6	3.1	1	21	928	948	928	949	0.95

Sequence Information

Coding Sequence: ATGGATGTCgattataatgaaagttatcaaATTAAAACGGAAGTAATTGTAAAGGAAACATTctcattttgtgaaaaatatgaagATAATGGGAATGGAGAGTTGAAAACAGAGGCGGTAGATTtcaaagaatcttttaaatgcgAAGAAGGATGTAATCTTTGGCAACATGTCAATATACACGACGTATTCATACCTCAATATAATTGTAATGAATTGTTCTTGACACAACCGTTGAAAACAACTTTGCATAGAAGGCTAAcgaaacatatgaaaattcatactagtgcagaatataagtgtaaagaatgtgattataaaacacagtggaaacagagattaaaggaacatgtgaaaattcatactggtgatgaatacaagtgtaatgaatgtgattataaatcgcagtggaaacagagtctaaaggaacatgttaaaattcatacaggtaatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaAAGACTAAtcgaacatgtgaaaattcatactggtgatgaatttaagtgtaaacaatgtaactataaaacagtgagaaaatCAAGGCTTAAGGAACACGtgaaaatccatactggtgatgaatataagtgtaatgaatgtaattataaaacaatttggaaACGGAGACTAATTGAACATGTAAaagttcatactggtgatgaatataagtgtatggaGTGTAACTATAGAACAGTGAGAAaagatagtctaaaggaacatgtgaaaattcataccggtgttgaatataagtgtaaagaatgtaactataaaacaataagaaaaaacagtctaaaggaacatgtaaaaattcacactggtgatgaatatacgTGTagggaatgtgattataaaacagtttggaaaccGAGACTAattgaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaactgtaagaaaaaacagtctaaaggaacacataaaaattcatactggtaatgaatataagtgtgaggaATGTTACTATAAATCAGTGAGGAAAGCGAAACTTAAGGCACATgcgaaaattcatactggtgatgaatttaagtgtaaaaaatgtaactataaaacattaaaagaaagtaGTTTAAAGAAACATGAAAAATTTCATACTGAGGAGGTACATAAATGTAgagaatgtaactataaaacagtgagaaaaaatagtctaaaggaacatgtaaaaattcatactggtgatgaatttaagtgtaaggaatgtaactataaaacagtgaggaaagcGAGGCTtaaggaacatatgaaaattcatactggtgatgaatttaagtTTTATACCATGGATATCGATTATGATGAAAGTAAACCAATAAAAACAGAAGTGCTTGTAAAGGAAACATTTTCATATTgtggaaaatatgaagATAATATGAGTGGAGAGTTGAAAACAGAGGCGGTAGATTTCGAAGAAGAATATAATCTTGGGCGGCACATCAATATACATGATGTGCTCATACCTCAATATATTTGCAGTGAATGTCATTTTATTACTGCGGAGAAAGACTCTCtaatagaacatttgaaaattactaacgatgttaaatatttttgtgaggAATGTAACTTTAACACTTGGTTGTCATGTTCAATAAAAGAACATTTCAGGATACATAACAGTGTTGGTTGTAGACAAGATactaaaaaatgtatctttaaGACACCACAGTTGAAAACACCTTTGAAATTGAGAGTAGGGGAACATGTGGAGATTCATACTGAtagtgaatataagtgtaaggaatatGACTATAAAACGGGGAGGAAACAGAAGCTtaaggaacatatgaaaattcatactgatgatgaatataattgtaaggaatgtgattataaaacaccgtgGAAACGGAATATGAATggtcatatgaaaattcatactggtgaagaatataattgtaaagaatgtgattataaaacaccatggaaacagagcttaaaggaacatgtgaaaattcatactggtgatgaatataagtgtacagaatgtgactataaaacggtgAGGAAACGTAGGCTTaaggaacatataaaaattcatactggtgatggaTATAATTGTAAggtatgtgattataaaacaccgtgGAAACATAATATGATGggacatatgaaaattcatactggtgaagaatataagtgtaaggaatgtaactataaaacagtgagaaaagaTAGTCTAAATAAACATATGAAAGTTCAtggtggtgatgaatataagtgtaaggaatgtacctataaaacagtaagaaaaagtagtctaaagaaacatgaaAAATTGCATTCTGATGAGGTACATCAATGTAgagaatgtaactataaaacagtgataaaaaattgtctaaagAAACATATGGAAGTTCATagtggtaatgaatataagtgtaaagaatgtgattataaaacagtttggaaaagCAGACTAATTGAACATGCAAaagttcatactggtgatgaatttaagtgtaagaaatgtaactataaaacattgAGAAAAAGTAGTCTAGAGAAACATGAAAAATTTCATACCGATGAGGTACATAAATGTAgagaatgtaactataaaacactaagaaaaaatagtctaaaggaacatgcaaaagttcatactggtgatgaatataagtgtaaggaatgtgtttataaaacggtatggaaacaGAGATTGattgaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtaattataaaacagggAGAAAAGATCATTTAAAgagacatgaaaaaaattcatactggtga
Protein Sequence: MDVDYNESYQIKTEVIVKETFSFCEKYEDNGNGELKTEAVDFKESFKCEEGCNLWQHVNIHDVFIPQYNCNELFLTQPLKTTLHRRLTKHMKIHTSAEYKCKECDYKTQWKQRLKEHVKIHTGDEYKCNECDYKSQWKQSLKEHVKIHTGNEYKCKECDYKTVWKQRLIEHVKIHTGDEFKCKQCNYKTVRKSRLKEHVKIHTGDEYKCNECNYKTIWKRRLIEHVKVHTGDEYKCMECNYRTVRKDSLKEHVKIHTGVEYKCKECNYKTIRKNSLKEHVKIHTGDEYTCRECDYKTVWKPRLIEHVKIHTGDEYKCKECNYKTVRKNSLKEHIKIHTGNEYKCEECYYKSVRKAKLKAHAKIHTGDEFKCKKCNYKTLKESSLKKHEKFHTEEVHKCRECNYKTVRKNSLKEHVKIHTGDEFKCKECNYKTVRKARLKEHMKIHTGDEFKFYTMDIDYDESKPIKTEVLVKETFSYCGKYEDNMSGELKTEAVDFEEEYNLGRHINIHDVLIPQYICSECHFITAEKDSLIEHLKITNDVKYFCEECNFNTWLSCSIKEHFRIHNSVGCRQDTKKCIFKTPQLKTPLKLRVGEHVEIHTDSEYKCKEYDYKTGRKQKLKEHMKIHTDDEYNCKECDYKTPWKRNMNGHMKIHTGEEYNCKECDYKTPWKQSLKEHVKIHTGDEYKCTECDYKTVRKRRLKEHIKIHTGDGYNCKVCDYKTPWKHNMMGHMKIHTGEEYKCKECNYKTVRKDSLNKHMKVHGGDEYKCKECTYKTVRKSSLKKHEKLHSDEVHQCRECNYKTVIKNCLKKHMEVHSGNEYKCKECDYKTVWKSRLIEHAKVHTGDEFKCKKCNYKTLRKSSLEKHEKFHTDEVHKCRECNYKTLRKNSLKEHAKVHTGDEYKCKECVYKTVWKQRLIEHVKIHTGDEYKCKECNYKTGRKDHLKRHEKNSYW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -