Lyun002693.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000380.1:1243167-1266133[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.2 2.9 8.7 0.9 1 23 17 39 17 39 0.97
2 19 0.08 1.1 9.9 3.3 1 23 44 66 44 66 0.98
3 19 0.03 0.42 11.3 2.4 1 23 71 93 71 93 0.98
4 19 0.0087 0.12 13.0 0.8 1 23 98 120 98 120 0.98
5 19 0.00012 0.0018 18.8 0.6 1 23 125 147 125 147 0.99
6 19 0.076 1.1 10.0 1.0 1 23 152 174 152 174 0.98
7 19 0.003 0.043 14.4 0.9 1 23 179 201 179 201 0.99
8 19 0.0024 0.035 14.7 2.7 1 23 206 228 206 228 0.99
9 19 0.005 0.071 13.7 0.5 1 23 233 255 233 255 0.98
10 19 0.2 2.9 8.7 0.9 1 23 260 282 260 282 0.97
11 19 0.08 1.1 9.9 3.3 1 23 287 309 287 309 0.98
12 19 0.0087 0.12 13.0 0.8 1 23 314 336 314 336 0.98
13 19 1.7 25 5.7 0.6 1 16 341 356 341 358 0.83
14 19 0.034 0.48 11.1 2.3 1 23 476 498 476 498 0.98
15 19 0.0093 0.13 12.9 0.9 1 23 529 551 529 551 0.98
16 19 0.75 11 6.9 4.0 1 23 556 578 556 578 0.98
17 19 3.8e-05 0.00054 20.4 1.3 1 23 583 605 583 605 0.99
18 19 0.036 0.51 11.0 1.4 1 23 610 632 610 632 0.98
19 19 0.0037 0.053 14.1 2.0 1 23 637 659 637 659 0.99

Sequence Information

Coding Sequence
atggaaggTAATCTAacgcaacatgtcaaaattcatactggtaacaaatataagtgtaaagaatgcaattataaaacagtgtggaaaacaCTTCTAAAgggacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaagacatctaaaggaacatgtcaaaattcatacaggtgaagaatataaatgtaatgaatgtgattataaaacagtatggaaaaggcatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaacagtatggaaaaataatctaaacagtcacgtcaaaattcatacaggtggtgaatataagtgtaatgaatgtgattataaaacaatagggAAAAGTAATCtgatgcaacatgtcaaaattcacacaggtcaagaatataagtgtaaagaatgtgaatataaaacagtttggaaaaatcaactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacgatatGGAAAAGTaacctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtaaaaaaaaattatctaaatcaacatgtcaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaacaatatggaaaggTAATCTAacgcaacatgtcaaaattcatactggtaacaaatataagtgtaaagaatgcaattataaaacagtgtggaaaacaCTTCTAAAGgggcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaagacatctaaaggaacatgtcaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaactgtgtggaaaaataatctaaacagtcatgtcaaaattcatacaggtgatgaatataagtgcaatgaatgtgattataaaacaATTTCGTTATACGCCTACCGGCACCGACCTCTCGACGCTAAGTTTATTCTCAACGTTAACTTCACAGTTCACGCTCCTTATACGATGGATGTAAACTCGTTAGACTTTATTAAAAGTTGTGatataaaatcagaagtaattttaacagagacattttctttttgtgggaaatacGAAGattGTGGGAGTAATGAACTGAAAACGGAGCTAGTAAATTACGAAGAATCGCTTAAacgtaaagaagaaaatgatgtgGCAGAACCCATAGATATACATGCTGCTCCGATGCAACAAGATTTTTGTATCGACTCTAATTTTACAACAATTGGTGAAACTTCACAAATAGAACTTTTGAGAGTTactaaaaacgttaaatactcttgtaagaaatgtaactttacaacccAGTTTGAAAGTTCTATAAAAGAGCATATGAGGATTCACAATAACGgatataatattgaagaatgtaattttaagatgcCACAGATTTTCCTTCTATCACAGTTGAAAACTCTAAGAAGTGAGAACGAAtatgtttgtaatgaatgtagtTATACCACATTGAACAAAGATTATCTAAGGAAACATGTGAATATTCACAAAAGCACTTCATATAGTTGTgaggaatgtaattataatacacGGTGGAAACATCACTTCACAGCACATGCAAAAATTCattctggtaatgaatataagtgtaaagaatgtgattacaaaacgatacggaaaagtgatctaatgcaacacgtcaaaattcatacaggtgatgaatataagtgtaaggaatgtgattataaaacaatgtggaaaacaaatctaaaggaacatgtcaaaattcatacaggcgaagaatataagtgtaaacaatgtgattataaaacagtatggaaaactAATCTAAACagacatctcaaaattcacATAGGTTCATGTAGGTAA
Protein Sequence
MEGNLTQHVKIHTGNKYKCKECNYKTVWKTLLKGHVKIHTGDEYKCKECNYKTVWKRHLKEHVKIHTGEEYKCNECDYKTVWKRHLKEHVKIHTGEEYKCNECDYKTVWKNNLNSHVKIHTGGEYKCNECDYKTIGKSNLMQHVKIHTGQEYKCKECEYKTVWKNQLKEHVKIHTGDEYKCKECDYKTIWKSNLMQHVKIHTGDEYKCKQCDYKTVKKNYLNQHVKIHTGEEYKCNECDYKTIWKGNLTQHVKIHTGNKYKCKECNYKTVWKTLLKGHVKIHTGDEYKCKECNYKTVWKRHLKEHVKIHTGEEYKCNECDYKTVWKNNLNSHVKIHTGDEYKCNECDYKTISLYAYRHRPLDAKFILNVNFTVHAPYTMDVNSLDFIKSCDIKSEVILTETFSFCGKYEDCGSNELKTELVNYEESLKRKEENDVAEPIDIHAAPMQQDFCIDSNFTTIGETSQIELLRVTKNVKYSCKKCNFTTQFESSIKEHMRIHNNGYNIEECNFKMPQIFLLSQLKTLRSENEYVCNECSYTTLNKDYLRKHVNIHKSTSYSCEECNYNTRWKHHFTAHAKIHSGNEYKCKECDYKTIRKSDLMQHVKIHTGDEYKCKECDYKTMWKTNLKEHVKIHTGEEYKCKQCDYKTVWKTNLNRHLKIHIGSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-