Lyun016593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:918697-920468[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0089 0.13 12.9 0.8 1 23 85 107 85 107 0.98
2 17 0.47 6.7 7.5 0.9 2 23 113 134 112 134 0.96
3 17 0.024 0.34 11.6 1.1 1 23 139 161 139 161 0.99
4 17 0.00047 0.0067 16.9 2.2 1 23 166 188 166 188 0.99
5 17 0.019 0.27 11.9 1.9 1 23 193 215 193 215 0.99
6 17 0.0034 0.048 14.3 1.0 1 23 220 242 220 242 0.98
7 17 0.025 0.36 11.5 0.8 1 23 247 269 247 269 0.99
8 17 0.32 4.5 8.1 1.7 1 23 274 296 274 296 0.98
9 17 0.011 0.15 12.6 2.1 1 23 301 323 301 323 0.99
10 17 7e-05 0.00099 19.5 1.4 1 23 328 350 328 350 0.98
11 17 0.00086 0.012 16.1 0.9 1 23 355 377 355 377 0.99
12 17 1 14 6.5 1.5 1 22 409 430 409 431 0.89
13 17 0.024 0.35 11.5 1.7 1 23 436 458 436 458 0.99
14 17 3.7e-05 0.00052 20.4 1.5 1 23 463 485 463 485 0.99
15 17 0.00023 0.0032 17.9 1.2 1 23 490 512 490 512 0.99
16 17 0.014 0.2 12.3 1.4 1 23 517 539 517 539 0.98
17 17 0.14 1.9 9.2 2.9 1 23 544 566 544 567 0.96

Sequence Information

Coding Sequence
atggATGCAGATTCTATTGAAAGCTGtgaaataaaatcagaaatgattttaacagaaacgtttTCATTCTGTGAAAAATATGGAGatCCTGATGGTGGGGAACTAAAAACTGAGTTTGTAGACGAATCATTTAAATGTCAAGATGAAGTTGATACTGTTTCGATGCAGCAACATTCCTACAATGCATGTAATCAAATCACAGTAACCAAAAATCGCCTTAATATGGaattgaaaattcatacaggtgttgaatatacatgtaaagaatgtgattacaaaactgtatggaaagatagtctaaagcaacatgtcaaaattcatacaggtgacctATTGAAGTGTaacaaatgtgattttaaaactgtatggaaactTAGTCTAAAGCAACACATCAATATTCATTcaggtgaaaaatataagtgtaaagaatgtgattttaaatcaGCGTGGAAActtagtctaaaggaacacatgagaatgcatacaggtgataaatataaatgtaaagaatgtgattatgaaacatGTGGGAAAGGTAATCTAaaacaacatgtcaaaattcatacaggtgaaaaatataagtgtaaagaatgtgattttaaaacaacgtGGAAAGTTAGTCTGAAGGATCATGTGAGAAAgcatacaggtgataaatataagtgtaaagaatgtgattataaaacattgggTAAAGGTAATCTAAagcaacacatcaaaattcatacaggcgacacatataagtgtaaagaatgtgattttaaaacaccatggaaaatTAGTCTAAagcaacacatcaaaattcatacaggcgacacatataggtgtaaagaatgtaattttaaaacacagTGGAAAGttagtctaaagaaacatgtccaAATTCATagaggcgatgaatataagtgtaaagaatgtgattataaaacaatatgggaaCATAATCTAAAgtcacatatcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattttaaatctgtacagaaaagtaatctaatgcaacatgttaaaattcatacaggtgacaaatacaagtgtaaagattgtgctTATGAAACTGCAGGGAAAAGTcaactaaagaaacatgtcaaaagtcatacaggtgatgaatataagtgtaaagaacgTGATTTGAAAACTGTGCCGAAAAGTGATcaaatgcaacatgtcaaaagtcatacaaattaccaatttaactgtaaagaatgtgattttaaaacaacgtGGAAAGCCAGTCTAAAGCGTCAtgacaaaattcatacaggtgacaaatataagtgtgaaaactgtgattataaaacaatttgggaacataatctaaaggaacatatcaaaatgcatacaggtgatgaatacaagtgtacagaatgtgattttaaaactgtacggaaaagtaatctaatgcaacatgtaaaaattcatacaggtgacaaatataagtgtaaagattgtgattatgaAACGATGCGGATAGATCAACTAAagaaacatctcaaaattcatagaggtgatgaatataagtgtaaaaactgtgattataaaacaacatgggaatataatctaaaggaacatgtcaagaTTCAtgcaggtgacgaatataagtgtggaaactgtgattataaaacaatatgggaaCATAATCTAAAGTTGCATATCAAAATTCATCATAcaagtgatgaatataagtga
Protein Sequence
MDADSIESCEIKSEMILTETFSFCEKYGDPDGGELKTEFVDESFKCQDEVDTVSMQQHSYNACNQITVTKNRLNMELKIHTGVEYTCKECDYKTVWKDSLKQHVKIHTGDLLKCNKCDFKTVWKLSLKQHINIHSGEKYKCKECDFKSAWKLSLKEHMRMHTGDKYKCKECDYETCGKGNLKQHVKIHTGEKYKCKECDFKTTWKVSLKDHVRKHTGDKYKCKECDYKTLGKGNLKQHIKIHTGDTYKCKECDFKTPWKISLKQHIKIHTGDTYRCKECNFKTQWKVSLKKHVQIHRGDEYKCKECDYKTIWEHNLKSHIKIHTGNEYKCKECDFKSVQKSNLMQHVKIHTGDKYKCKDCAYETAGKSQLKKHVKSHTGDEYKCKERDLKTVPKSDQMQHVKSHTNYQFNCKECDFKTTWKASLKRHDKIHTGDKYKCENCDYKTIWEHNLKEHIKMHTGDEYKCTECDFKTVRKSNLMQHVKIHTGDKYKCKDCDYETMRIDQLKKHLKIHRGDEYKCKNCDYKTTWEYNLKEHVKIHAGDEYKCGNCDYKTIWEHNLKLHIKIHHTSDEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-