Lyun014864.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002119.1:3508853-3520628[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.074 1 10.0 0.1 1 21 68 88 68 89 0.95
2 26 8.5e-05 0.0012 19.3 1.3 1 23 173 195 173 195 0.98
3 26 0.17 2.4 8.9 1.9 1 23 200 222 200 222 0.97
4 26 0.00035 0.005 17.3 1.4 2 23 229 250 228 250 0.97
5 26 1.4 20 6.0 2.2 1 23 255 277 255 277 0.96
6 26 0.061 0.87 10.3 1.3 1 23 282 304 282 304 0.98
7 26 0.00038 0.0054 17.2 3.7 1 23 309 331 309 331 0.99
8 26 0.0032 0.045 14.3 2.2 1 23 336 358 336 358 0.98
9 26 9.2 1.3e+02 3.4 0.5 1 23 363 385 363 385 0.92
10 26 3.9 55 4.6 0.0 1 21 477 497 477 498 0.93
11 26 0.0078 0.11 13.1 3.1 1 23 583 605 583 605 0.99
12 26 0.0081 0.11 13.1 1.7 1 23 610 632 610 632 0.99
13 26 3.2 46 4.9 4.1 1 23 637 659 637 659 0.97
14 26 0.0081 0.11 13.1 1.7 1 23 664 686 664 686 0.99
15 26 1.4 20 6.0 3.1 1 23 691 713 691 713 0.97
16 26 0.0004 0.0056 17.2 3.3 1 23 718 740 718 740 0.98
17 26 0.44 6.3 7.6 3.4 1 23 744 766 744 766 0.98
18 26 0.55 7.8 7.3 3.1 1 23 771 793 771 793 0.98
19 26 0.021 0.3 11.8 4.1 1 23 798 820 798 820 0.99
20 26 0.001 0.015 15.9 4.3 1 23 825 847 825 847 0.99
21 26 0.011 0.16 12.6 1.4 1 23 852 874 852 874 0.98
22 26 0.00074 0.011 16.3 4.3 1 23 879 901 879 901 0.99
23 26 0.00031 0.0043 17.5 2.5 1 23 906 928 906 928 0.99
24 26 0.22 3.1 8.6 0.8 1 23 960 982 960 982 0.98
25 26 0.00012 0.0016 18.9 4.1 1 23 987 1009 987 1009 0.99
26 26 0.062 0.88 10.3 1.4 1 23 1068 1090 1068 1090 0.98

Sequence Information

Coding Sequence
ATGGATGTGGACAATATCATAAGTTATCCAATAAAATCAGAAGTCGTTATAAAGGAAACATTTGCTTATTGTGAAAAATTTGATGattatggTAATGGAGAATTGAAAACTGAACCACTGGattgtaaaaaatcttttaaatgcgAAGTGGAAGATAATTTACCGGAGCACATTGATATAAGTGGTGTGCCCATacaacaatatatttgtaatgactgtaattttattacaaccgAGAAAGATTATCTAATAGAACAtctgaaaattactaaaaatgttgaatatttttgcAAGGTATGTGATCTTAAAACTCTGTTAGAATGTTCAATAAAAGAACATGCCAAGATTCATAACAAGGTTGATCATAGATGTATAACTAACAAATGTAACTTTAAGACATCACAAATATTATCTCTAGCATCACagttgaaaattacaaaaagtggtgatgaatatatttataaggaatgtgattataagacacCACAGAAACAGGAAATTTATACTGgtaaagaatataagtgtaatgaatgtgactataaaacaatgAGGAAAGATGATTTAAAAAGACATGTGAACATACAcataggtgatgaatataaatgtaatgaatgtgattataaaacactgtggaaacagagtctaaagagacatatgaaaattcatactggtgatgagcACAGTAAGTGtcaggaatgtgattatacatCACGgtcgaaatttaatttaagggaacatataaaaattcatagtgatgatgaatttaaatgtaaggaatgtgattataaaacaccatggaaacagtgtctaaaggaacacgcgaatattcatactggtgatgtaTACAcgtgcaaggaatgtgattacaatACAAGGTGGAAAcggagtctaaaggaacatgtgaaaattcacactgatgatgaatataaatgtaagaaatgtgattataaaactccaaggaaacagagtctaaagcaacatgtaaaAACTCATACTGAtgatcaatataagtgtaaagaatgtgactataaaacagtgaggaaagcAAGACTAAAAGAACAtaagaaaattcatactggtgatgaatataagtgtaacgaatgtatttttaaaacaccatggcaacagaatctaaaggagcatgtgaaaattcatactggtgataaatataagtgtaaggaatgtgtcTATAGAACTGTTTgcaaagATAAACCTGAAGATCATATAATGGACATTGATTATGATGAAAGTTACATGATAAAATCAGAGATAACTGTACAGGatacattttttgattgtaGAAATTATGAAGattatggGAATGAAGAGTTTAAAACTGAGCCAGTAGATatagaaaaatcttttaaatacgAAGAAGAGAATAATCTTGAAAAGCTCACCAATGTAAATGATGTACCTGTGCATCAATATATTTGTaacgaatgtaattttattgctATAGAAAAAGATTCTTTAGTCTTACACTTgaacattattaaaaacgttCGATATTTTTGCGAAGAGTGTAATTTTAAAACGCTGTTTCTATGTTCAATAAAAGAACATTTCAGGATTCATAACGGAGTTGTTTGTAgatatattactaaaaaaagtcattttaaGACACCACGAATTTTCTCGTTAGCTCCACACAGTGGTAACAAACTTATTTATAGGGAATGTGATGATGAAACATCAAAAAAACAGAAAGTAAAGCAACATTTGAgaattcatagtggtgatgaatataagtgtaacaaaTGTGCCTATAAAACACAGAGGAAACgaaatctaaaggaacatttaaaaattcatactggtgatgaatataagtgtaaagaatgtgattacaaaacacgttggaaacaaaatttaaaggaacatttaaatattcatagtgattataaatataattgtaagcaatgtgattataaaacacattggaaacaaaatctaaaggaacatttgaaacttcatactggtgatgaatataagtgtaaagaatgtgattacaaaacacgttggaaacaaaatttaaaggaacatttaaatattcatagtgattataaatataattgtaaggaatgtgattataaaacacattggaaacagagtctaaaggaacatttaaaaattcatactgatgagGAACATAAGTGTagcgaatgtgattataaaacacctcgcaagtcgtatttaaaaaaacatgtacaAATTCATAGTGATGAATATatttgtaaggaatgtgattataaaacacattggaaacagagtctaaagaaacatttaaaaattcatactaatgaggaatataagtgtagcgaatgtgattataaaacacattggaaacaaagtctaaaggaacatttaaaaattcatactaatgaggaatataagtgtagcgaatgtgattataaaacacgctggaaacaacatttaaagaaacatttaaatattcatactggtggtgaatataagtgttacaaatgtgattataaaacatcacagAAAATGTATCTAAAgcgacatttaaaaattcatagtgatcATGAATATAACTGTACagaatgtgaatataaaacatCACAGATAAAGTATCTAAatcaacatttgaaaattcatagtgatcctgaatataagtgtaaggaatgtgattataaaacatgtCGGAAAtggagtctaaaggaacatttaaaaattcacactgatgatgaatataaatgtagtgAGTGTGAATATAAAACATCACAGAAAATGTATCTAATTCGACATTTGAAAACTCATAGGGATCCTGaacataagtgtaaggaatgtgattataaatcacATTGGAAACATTCCTTaatggaacatttaaaaattcatgctggtgatgaatataagtgtaaggaatgtgattttaaaacaccatggaaacagagtctaaaggaacatttaagcATTCATACTgatgaggaatataagtgtaacaaatgtgattataaaacatcacagaaaaagtatctaaatcgacatttgaaaattcatagcGAACCTGAAtacaaatgtaaagaatgtgattataaaacacattggAAACGATGTGTAATGgaacattcaaaaattcatagtgatcctgaatacaagtgtaaagaatgtgattttataACACATTGGAAACGAAGTATAacagaacatttgaaaattcatactggtgttgaatataagtgtacggaatgtgattataaagcatattggaaaaacaatttaaagacacatttaaaaattcataaaaggtaa
Protein Sequence
MDVDNIISYPIKSEVVIKETFAYCEKFDDYGNGELKTEPLDCKKSFKCEVEDNLPEHIDISGVPIQQYICNDCNFITTEKDYLIEHLKITKNVEYFCKVCDLKTLLECSIKEHAKIHNKVDHRCITNKCNFKTSQILSLASQLKITKSGDEYIYKECDYKTPQKQEIYTGKEYKCNECDYKTMRKDDLKRHVNIHIGDEYKCNECDYKTLWKQSLKRHMKIHTGDEHSKCQECDYTSRSKFNLREHIKIHSDDEFKCKECDYKTPWKQCLKEHANIHTGDVYTCKECDYNTRWKRSLKEHVKIHTDDEYKCKKCDYKTPRKQSLKQHVKTHTDDQYKCKECDYKTVRKARLKEHKKIHTGDEYKCNECIFKTPWQQNLKEHVKIHTGDKYKCKECVYRTVCKDKPEDHIMDIDYDESYMIKSEITVQDTFFDCRNYEDYGNEEFKTEPVDIEKSFKYEEENNLEKLTNVNDVPVHQYICNECNFIAIEKDSLVLHLNIIKNVRYFCEECNFKTLFLCSIKEHFRIHNGVVCRYITKKSHFKTPRIFSLAPHSGNKLIYRECDDETSKKQKVKQHLRIHSGDEYKCNKCAYKTQRKRNLKEHLKIHTGDEYKCKECDYKTRWKQNLKEHLNIHSDYKYNCKQCDYKTHWKQNLKEHLKLHTGDEYKCKECDYKTRWKQNLKEHLNIHSDYKYNCKECDYKTHWKQSLKEHLKIHTDEEHKCSECDYKTPRKSYLKKHVQIHSDEYICKECDYKTHWKQSLKKHLKIHTNEEYKCSECDYKTHWKQSLKEHLKIHTNEEYKCSECDYKTRWKQHLKKHLNIHTGGEYKCYKCDYKTSQKMYLKRHLKIHSDHEYNCTECEYKTSQIKYLNQHLKIHSDPEYKCKECDYKTCRKWSLKEHLKIHTDDEYKCSECEYKTSQKMYLIRHLKTHRDPEHKCKECDYKSHWKHSLMEHLKIHAGDEYKCKECDFKTPWKQSLKEHLSIHTDEEYKCNKCDYKTSQKKYLNRHLKIHSEPEYKCKECDYKTHWKRCVMEHSKIHSDPEYKCKECDFITHWKRSITEHLKIHTGVEYKCTECDYKAYWKNNLKTHLKIHKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-