Lyun007074.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2151450-2157320[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.056 0.8 10.4 0.0 1 21 68 88 68 89 0.96
2 22 4.7 66 4.4 5.8 1 20 152 171 152 173 0.94
3 22 0.021 0.29 11.8 4.5 1 23 178 200 178 200 0.98
4 22 8.9e-05 0.0013 19.2 1.3 1 23 205 227 205 227 0.98
5 22 0.0032 0.045 14.3 5.3 1 23 232 254 232 254 0.99
6 22 0.011 0.16 12.6 5.2 1 23 259 281 259 281 0.99
7 22 0.073 1 10.1 2.4 1 23 286 308 286 308 0.98
8 22 0.0034 0.049 14.2 5.2 1 23 313 335 313 335 0.99
9 22 1.9 27 5.6 0.5 1 23 340 362 340 362 0.87
10 22 0.041 0.58 10.9 1.9 1 23 367 389 367 389 0.98
11 22 0.011 0.16 12.6 0.9 1 23 394 416 394 416 0.98
12 22 0.07 0.99 10.1 1.9 1 23 421 443 421 443 0.98
13 22 0.0064 0.09 13.4 5.1 1 23 448 470 448 470 0.99
14 22 0.0064 0.09 13.4 5.1 1 23 475 497 475 497 0.99
15 22 0.00095 0.013 16.0 3.6 1 23 502 524 502 524 0.99
16 22 0.12 1.7 9.4 3.1 1 23 529 551 529 551 0.98
17 22 0.0046 0.065 13.8 1.0 1 23 556 578 556 578 0.99
18 22 0.24 3.4 8.4 4.0 1 23 583 605 583 605 0.98
19 22 0.58 8.2 7.2 4.8 1 23 610 632 610 632 0.98
20 22 1.9 27 5.6 0.5 1 23 637 659 637 659 0.87
21 22 0.059 0.84 10.3 1.1 1 23 664 686 664 686 0.98
22 22 0.00015 0.0021 18.5 1.6 1 23 691 713 691 713 0.99

Sequence Information

Coding Sequence
ATGGACGCCGAATATAAGGAAAGTTGCccaataaaatcagaagtgattgTACACGAAACATTCTCCTATTGTGGACaatatgaagGTTATGGGaatgaagaattgaaaacaGGACCAGTAAATTtggaagaatcttttaaatgcaaagaagaagaagataatctTGAAGAGCAAACCTCCCAAAGTATACCCGTGCATAAATATatgtgtaatgaatgtaattttattgcaaCAGTGAAGgattctctaatagaacatatgaaaattactaagaacgttcaatatttttgtatggaatgtaattttacaaccGTATTCGAATGTTCTATAAAGCAACATTTCAGGATTCATAACAGGGTTGGTTGTAAACATATCACTAAACAACATAACTCTAAGACATCACAAATTTTCTCTTTAGCACCACATTTGAAAAATCCAAAAGGTGGTGATGAGTATATATGCAAgaaatgtcattataaaacacAACATAAATGGAGTATGAAGAAACATAGAATTCATACTGCTGAACAATATATGTGCAAggaatgtgaatataaaacaatacacaaaCATCTACTAacgcaacatgtaaaaattcatactggcgatgaatatatgtgtaatgagtgtaattataaGACTGTACGGAAAGATACTCTCAggcaacacatcaaaattcataccaatgataaatataagtgtaaggaatgtgattataaaacaatacacaaaCATCTACTAacgcaacatgtaaaaattcatactggtaatcaATACAAGTGTagggaatgtgattataaaacaatacacaaaCATCTACTAacgcaacatgtaaaaattcatactggcgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacatcTACTAacgcaacatgtaaaaattcatactggcgatgaatataagtgtagggaatgtgattataaaacaatacacaaaCATCTACTAAcgcaacatataaaaattcatactggcgatgaatataagtgtaacgagtgtaattataaaacagtatggaaagaTATTCTAATGCAAcacgtaaaaattcatactggtgatgaatataagtgtaatgtgtgtaattataaaacaatatggaaacataATCTAATACAAcacgtaaaaattcatactggtgatgaatataagtgtaacgagtgtaattataaaacagtacggaaagATATTCTAATGCAAcacgtaaaaattcatactggtgatgaatataagtgtagggaatgtgattataaaacaatatggaaacataATCTAATACAAcacgtaaaaattcatactggtgatgaatataagtgtaatgtgtgtaattataaaacaatacacaaaCATCTACTAacgcaacatgtaaaaattcatactggtgatgaatataagtgtaatgtgtgtaattataaaacaatacacaaaCATCTACTAacgcaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatacacaaatatatgctaacgcaacatgtaaaaattcatactggtgatcaATACAAGTGTaagaaatgtgattttaaaacaatatggaaacataATCTAATACAAcacgtaaaaattcatactcgtgatgaatataagtgtaccgagtgtaattataaaacagtacggaaagATATTCTAATGcaacacattaaaattcatactggtgatgagtataagtgtagtgaatgtgattataaaacaatacacaaaCATATACTAatgcaacatgtaaaaattcatactggcgatgaatataagtgtagggaatgtgattataaaacaatacacaaaCATATACTAacgcaacatgtaaaaattcatactggtgatgaatataagtgtaacgagtgtaattataaaacagtatggaaagaTATTCTAATGCAAcacgtaaaaattcatactggtgatgaatataagtgtaatgtgtgtaattataaaacaatatggaaaaatacTCTAATGCGAcacgtaaaaattcatactggtgatgaatataagtgtacggagtgtaattataaaacagtacgaaaagATACTCTATTGCGAcacgtaaaaattcatactggtgaatataagtgtaaggaatttGACGTTAAGAAAggaaagaataatagagtattattgttacttactgtaggtacaacagctactgctgagaattttaattatttaacgaactacttgtctaaagaaaaagctgcaggtccacgatttcgattataa
Protein Sequence
MDAEYKESCPIKSEVIVHETFSYCGQYEGYGNEELKTGPVNLEESFKCKEEEDNLEEQTSQSIPVHKYMCNECNFIATVKDSLIEHMKITKNVQYFCMECNFTTVFECSIKQHFRIHNRVGCKHITKQHNSKTSQIFSLAPHLKNPKGGDEYICKKCHYKTQHKWSMKKHRIHTAEQYMCKECEYKTIHKHLLTQHVKIHTGDEYMCNECNYKTVRKDTLRQHIKIHTNDKYKCKECDYKTIHKHLLTQHVKIHTGNQYKCRECDYKTIHKHLLTQHVKIHTGDEYKCKECDYKTIWKHLLTQHVKIHTGDEYKCRECDYKTIHKHLLTQHIKIHTGDEYKCNECNYKTVWKDILMQHVKIHTGDEYKCNVCNYKTIWKHNLIQHVKIHTGDEYKCNECNYKTVRKDILMQHVKIHTGDEYKCRECDYKTIWKHNLIQHVKIHTGDEYKCNVCNYKTIHKHLLTQHVKIHTGDEYKCNVCNYKTIHKHLLTQHVKIHTGDEYKCKECDYKTIHKYMLTQHVKIHTGDQYKCKKCDFKTIWKHNLIQHVKIHTRDEYKCTECNYKTVRKDILMQHIKIHTGDEYKCSECDYKTIHKHILMQHVKIHTGDEYKCRECDYKTIHKHILTQHVKIHTGDEYKCNECNYKTVWKDILMQHVKIHTGDEYKCNVCNYKTIWKNTLMRHVKIHTGDEYKCTECNYKTVRKDTLLRHVKIHTGEYKCKEFDVKKGKNNRVLLLLTVGTTATAENFNYLTNYLSKEKAAGPRFRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-