Lyun000502.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:834101-836045[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.013 0.19 12.4 0.1 1 21 67 87 67 88 0.95
2 18 0.00061 0.0087 16.6 2.2 1 23 171 193 171 193 0.99
3 18 0.00011 0.0015 19.0 5.1 1 23 198 220 198 220 0.99
4 18 0.0008 0.011 16.2 3.1 1 23 225 247 225 247 0.99
5 18 0.0065 0.092 13.4 1.7 1 23 252 274 252 274 0.99
6 18 7.9e-05 0.0011 19.4 0.5 1 23 279 301 279 301 0.99
7 18 5.1 72 4.3 0.3 11 23 316 328 313 328 0.91
8 18 1.9 26 5.6 3.4 1 23 333 355 333 355 0.95
9 18 0.0088 0.13 12.9 0.8 1 23 360 382 360 382 0.99
10 18 0.37 5.2 7.9 1.6 1 23 387 409 387 409 0.97
11 18 0.00021 0.003 18.0 3.7 1 23 414 436 414 436 0.99
12 18 0.0079 0.11 13.1 0.8 1 23 441 463 441 463 0.99
13 18 0.44 6.3 7.6 0.6 1 23 468 490 468 490 0.96
14 18 0.032 0.45 11.2 1.4 1 23 496 518 496 518 0.98
15 18 0.0046 0.065 13.8 2.3 1 23 523 545 523 545 0.99
16 18 5.7e-05 0.0008 19.8 1.4 1 23 550 572 550 572 0.99
17 18 0.034 0.49 11.1 3.3 1 23 577 599 577 599 0.99
18 18 0.01 0.14 12.8 1.5 1 23 604 626 604 626 0.99

Sequence Information

Coding Sequence
atGGATGGTGATTATAACGAAACTTGCATGATAAAATCCGAAACTGTACAGGAAACATTTTCATATTGTGGAAATTATGAATATTATGGGAATCAAGAATTGAAAAAGGAGCTGGTAGGAatagaaaaatcttttaaatgggaAGACGAGGAGAATCTTGTGGAGCTCACTGACCTACATGCTGTACCCATACAAGagtatatttgtaatgaatgtaatttcgTTACAACGGAGAAAGATTCTTTAATACAACACTTGAACttgattaaaaatgtttgctatttcTGCAAGGGATGTAATTTTAAGACACTGTTTGGATGTTCGATAAAAGAGCATTTCAGAATTCATAACAGGGTTGGTTGTAGatatattactaaaaatttcaagacACCACAAATTTTCTCTTTGGTACCACAAAGTGGTAACAAACATATTTGTAAGGAACGTGATTATAAAATACCACAGAAATGGAGGTTAAAGgagcatttaaaaattcatagtgatcatgaatataagtgtaatgaatgtgattataaaacacaatcgAAACGGagtttaaaggaacatttaaaaattcatactggtgatgaatataagtgcaatgaatgtcattataaaacaacaagaaaaaggaatctacagcaacatttacaaattcataGTGAccctgaatataagtgtaatgaatgttattataaaacagCGCGGAAACACAGCCTAATGGGTCATATGAGAATTCATtccggtgatgaatataagtgtaaggaatgtgattttaaaacaatatggaaacagaatctaaagcaacatttacGAATTCATAGTGAtcctgaatataagtgtaatgaatgtgattataaagcagCGCAGAAACAAAGTCTAATGGatcatatgagaattcatactggtgatgaatataaatgtattaaatctGCATATAAAATATCACAGAAGcagaatctaaaggaacatttgaaaattcatagtggtcatgaatataagtgtaaggaatgtgattataaaacattatggaaacagaatctaaaggaacatttaaagaTTCATACTggagatgaatataagtgcaatgaatgtgattataaatcacCATGGAAAAACAATCTAAAGGACCATTTACAAATGCATAGTgatcatgaatataagtgtaaggagtgtgattttaaaacgcaatggaaacagagtttaaaggaacatgtaaaaattcacaccggtgataaatataagtgcaataaatgtaattataaaacatcaaggaaacagagtctaaaggaacatctaaaaattcatactggtgatgaatataagtgcagtgaatgtgattataaaacaccatggaaacagaatctaaaggaacatttaaaaattcatactggtgatgaatataagtgtatcgAATGTGGTTATGAAACACCATGGAAACCGAATCTAAAGCATCATTTGAAAATTCACAATGatgataataaatataagtgtacagaatgtgattataaaacacagtggaAACGGAGTCTAAaagcacatttaaaaatacatactggtgatgaatataagtgtaaggagtgtggttttaaaacaatatggaaacataatctaaaggcacatttaaaaatccataccgttgatgaatataagtgcaatgaatgtgattataaaacatcaacaaAACAGAGTCTGGAAAATCATGTAAAAGTTCATAGTGgaaatgaatataagtgtaaggaatgtggttttaaaacaatatggaaacatagtctaaagacacatttaaaaatccatattggtgatgaatataaatgtaagtattgtgattataaaacaccatgggaaaataattttaacagacatattaaaattcatatgcACATGCAACTCTAA
Protein Sequence
MDGDYNETCMIKSETVQETFSYCGNYEYYGNQELKKELVGIEKSFKWEDEENLVELTDLHAVPIQEYICNECNFVTTEKDSLIQHLNLIKNVCYFCKGCNFKTLFGCSIKEHFRIHNRVGCRYITKNFKTPQIFSLVPQSGNKHICKERDYKIPQKWRLKEHLKIHSDHEYKCNECDYKTQSKRSLKEHLKIHTGDEYKCNECHYKTTRKRNLQQHLQIHSDPEYKCNECYYKTARKHSLMGHMRIHSGDEYKCKECDFKTIWKQNLKQHLRIHSDPEYKCNECDYKAAQKQSLMDHMRIHTGDEYKCIKSAYKISQKQNLKEHLKIHSGHEYKCKECDYKTLWKQNLKEHLKIHTGDEYKCNECDYKSPWKNNLKDHLQMHSDHEYKCKECDFKTQWKQSLKEHVKIHTGDKYKCNKCNYKTSRKQSLKEHLKIHTGDEYKCSECDYKTPWKQNLKEHLKIHTGDEYKCIECGYETPWKPNLKHHLKIHNDDNKYKCTECDYKTQWKRSLKAHLKIHTGDEYKCKECGFKTIWKHNLKAHLKIHTVDEYKCNECDYKTSTKQSLENHVKVHSGNEYKCKECGFKTIWKHSLKTHLKIHIGDEYKCKYCDYKTPWENNFNRHIKIHMHMQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-