Lyun000511.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:951643-954361[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.082 1.2 9.9 0.1 1 21 63 83 63 84 0.95
2 25 1.9 27 5.6 1.6 1 23 142 164 142 164 0.94
3 25 1.6 22 5.9 1.2 1 23 169 191 169 191 0.92
4 25 0.00087 0.012 16.1 0.9 1 23 196 218 196 218 0.99
5 25 0.24 3.3 8.5 3.5 1 23 223 245 223 245 0.97
6 25 0.089 1.3 9.8 2.1 1 23 250 272 250 272 0.97
7 25 0.00052 0.0074 16.8 0.8 1 23 277 299 277 299 0.99
8 25 0.086 1.2 9.8 3.1 1 23 304 326 304 326 0.97
9 25 0.51 7.2 7.4 4.3 1 23 328 350 328 350 0.97
10 25 0.00087 0.012 16.1 0.9 1 23 355 377 355 377 0.99
11 25 0.24 3.3 8.5 3.5 1 23 382 404 382 404 0.97
12 25 0.055 0.78 10.4 0.7 1 23 409 431 409 431 0.97
13 25 0.089 1.3 9.8 2.1 1 23 436 458 436 458 0.97
14 25 0.00052 0.0074 16.8 0.8 1 23 463 485 463 485 0.99
15 25 0.069 0.97 10.1 3.5 1 23 490 512 490 512 0.97
16 25 0.0057 0.081 13.5 0.8 1 23 517 539 517 539 0.98
17 25 1.6 22 5.9 6.5 1 23 544 566 544 566 0.93
18 25 0.023 0.32 11.6 0.7 1 23 571 593 571 593 0.99
19 25 7.7 1.1e+02 3.7 2.2 12 23 598 609 597 609 0.92
20 25 2e-05 0.00028 21.3 2.9 1 23 614 636 614 636 0.98
21 25 0.17 2.4 8.9 4.7 1 23 641 663 641 663 0.97
22 25 2 28 5.6 4.0 1 23 668 690 668 690 0.92
23 25 0.0014 0.02 15.4 0.7 1 23 695 717 695 717 0.99
24 25 0.0049 0.069 13.8 0.7 2 23 723 744 723 744 0.98
25 25 0.0034 0.048 14.2 4.0 1 23 749 771 749 771 0.98

Sequence Information

Coding Sequence
atGGATGTTAATTACATTGAGACTTCCCTGATAAAATCAGAAACATTTTCATATTGTGGAAATTATGAAGATTATGAGAATCAACAATTGAAAATGGAGCCggtagaaattgaaaaaacttttaaatgtgaAGAAGACGAAAATCTTATCGAGCTCACCAACCTACATGCCGAACCCGTACAacattatatttgtaatgaatgtagtTTCATTACAACCGAGAAAGATTCTTTAAtacaacatttgaaaattattaagaatGTTCACTATTTTTGCAAACGGTGTAATTTTAAAACCCGCTTTGGATGTTCAGTAAAAGACCATCTTAGGATTCATAACAGGGTTGGTTGTAgacatattactaaaaaatgtaatttcaagacgtcacaaattttttcttttgcaccACAAAGTGGTAACAAACATATTTGTAATGGATGTGGTTATAAGACACAATGGAAAtggagtctaaaggaacacttaaaatttcatactggtgatgaatataagtgtaaggaatgtaattataaaacacaatggaaacAGAACATAAAGGaacatttattaattcatactggtgatgaatataagtgtaatgaatgtgattataaaacaccatggcgAGGGAATCTAAAGCGACATTTGCAAACTCATACGAGTGATGAACATAAGtgtaagaaatgtgattataaaacaccgtggaaacagaatctaaaacAACATTTGACAATTCATAGTGATCATGGATATaactgtaacgaatgtgattataaaacacaatggaaacagaatctaaagaagcatttaaaacttcatactggtgatgaatataagtgtaatgaatgtgattataaaacaccatggcaAGGAAATCTAAAGCGACATTTGCAAACTCATACGAGTGATGAACATACAtgtaagaaatgtgattataaaacatcatggaaacagaatctaaagcaacatttggCAATTCATGGacataagtgtaaggaatgtgattataaaacacaatggaaacagaatctaaagcaacatttaaaacttcatagtggtgatgaatataagtgtaatgaatgtgattataaaacaccatggcgAGGGAATCTAAAGCGACATTTGCAAACTCATACGAGTGATGAACATAAGtgtaagaaatgtgattataaaacaccgtggaaacagaatctaaaacAACATTTGACAATTCATAGTGATCATGGATATaactgtaacgaatgtgattataaaacaccatggaaacagaatctaaagcaacatttgaCAATTCATAGTGATCATGGATATaactgtaacgaatgtgattataaaacacaatggaaacagaatctaaagaagcatttaaaacttcatactggtgatgaatataagtgtaacgaatgtgattataaaacaccatggcaAGGAAATCTAAAGCGGCATTTGCAAACTCATACGAGTGATGAACATAAATGTAAgaaatgcgattataaaacatcatggaaacagaatctaaagcaacatttggCAATTCATAGTGATCATGGATATaactgtaaggaatgtgattataaaacaccatggaaagggaatctaaagcaacatttgcAAACTCATTCAAGTCATGGacataaatgtaaggaatgtgattataaaacacaatggaaacAGAATCTTAAGCACCATTTAAAacttcatactggtgatgaatataagtgtaatgcatgtgattataaaacaccatggaaagggaatctaaagcaacatttgcAAACTCATACGACTAATGaacataaatGGAATCTAAAGCGACATTTGCAAACTCATTCAAGTCATGAacataagtgtaatgaatgcgattataaaacaccaagGCAAGGGAATCTAAAGCGGCATTTGCAAACTCATACGAGTCATGAACATAAGtgtaagaaatgtgattataaaacaacatggaaacAGAATCTGAAGCAACATTTGACAATTCATAGTGATCATGGATATAACTGttatgaatgtgattataaaacacaatggaaacagaatctaaagcaCCATTTAAAacttcatactggtgatgaatataagtgtaatgaatgtgattataaaaccccATGGCAAGggaatctaaagcaacatttgcAAACTCATACGAGTGATGAACCTAAGTGTAatgagtgtgattataaaacaccatggcaAGGTAATCTAAAGCGACATTTGCAAACTCATATGAGCGATGAACATAAGTGTAAggtatgtgattataaaacacaacagaaacagaatctaaaggatcatttaaaaattcatatgggTGATGAACATCTATAA
Protein Sequence
MDVNYIETSLIKSETFSYCGNYEDYENQQLKMEPVEIEKTFKCEEDENLIELTNLHAEPVQHYICNECSFITTEKDSLIQHLKIIKNVHYFCKRCNFKTRFGCSVKDHLRIHNRVGCRHITKKCNFKTSQIFSFAPQSGNKHICNGCGYKTQWKWSLKEHLKFHTGDEYKCKECNYKTQWKQNIKEHLLIHTGDEYKCNECDYKTPWRGNLKRHLQTHTSDEHKCKKCDYKTPWKQNLKQHLTIHSDHGYNCNECDYKTQWKQNLKKHLKLHTGDEYKCNECDYKTPWQGNLKRHLQTHTSDEHTCKKCDYKTSWKQNLKQHLAIHGHKCKECDYKTQWKQNLKQHLKLHSGDEYKCNECDYKTPWRGNLKRHLQTHTSDEHKCKKCDYKTPWKQNLKQHLTIHSDHGYNCNECDYKTPWKQNLKQHLTIHSDHGYNCNECDYKTQWKQNLKKHLKLHTGDEYKCNECDYKTPWQGNLKRHLQTHTSDEHKCKKCDYKTSWKQNLKQHLAIHSDHGYNCKECDYKTPWKGNLKQHLQTHSSHGHKCKECDYKTQWKQNLKHHLKLHTGDEYKCNACDYKTPWKGNLKQHLQTHTTNEHKWNLKRHLQTHSSHEHKCNECDYKTPRQGNLKRHLQTHTSHEHKCKKCDYKTTWKQNLKQHLTIHSDHGYNCYECDYKTQWKQNLKHHLKLHTGDEYKCNECDYKTPWQGNLKQHLQTHTSDEPKCNECDYKTPWQGNLKRHLQTHMSDEHKCKVCDYKTQQKQNLKDHLKIHMGDEHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-