Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001168.1:1076381-1078236[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.016 0.23 12.1 1.5 1 23 143 165 143 165 0.98

2 17 0.045 0.64 10.7 1.4 1 23 170 192 170 192 0.98

3 17 2.3e-05 0.00032 21.1 1.1 1 23 197 219 197 219 0.99

4 17 0.016 0.23 12.1 0.6 1 23 224 246 224 246 0.98

5 17 0.0063 0.089 13.4 1.7 1 23 251 273 251 273 0.98

6 17 0.048 0.67 10.6 0.6 1 23 278 300 278 300 0.98

7 17 0.0012 0.017 15.7 2.4 1 23 305 327 305 327 0.99

8 17 0.001 0.015 15.9 1.1 1 23 332 354 332 354 0.99

9 17 0.007 0.099 13.3 1.4 1 23 359 381 359 381 0.98

10 17 0.4 5.7 7.7 0.3 1 23 386 408 386 408 0.98

11 17 0.00013 0.0018 18.8 1.3 1 23 413 435 413 435 0.99

12 17 0.063 0.89 10.3 0.2 1 23 440 462 440 462 0.98

13 17 0.0064 0.091 13.4 4.1 1 23 467 489 467 489 0.99

14 17 0.008 0.11 13.1 1.1 1 23 494 516 494 516 0.98

15 17 0.00096 0.014 16.0 4.1 1 23 521 543 521 543 0.99

16 17 0.0042 0.059 14.0 2.7 1 23 548 570 548 570 0.99

17 17 0.72 10 6.9 4.4 1 23 575 597 575 599 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.016	0.23	12.1	1.5	1	23	143	165	143	165	0.98
2	17	0.045	0.64	10.7	1.4	1	23	170	192	170	192	0.98
3	17	2.3e-05	0.00032	21.1	1.1	1	23	197	219	197	219	0.99
4	17	0.016	0.23	12.1	0.6	1	23	224	246	224	246	0.98
5	17	0.0063	0.089	13.4	1.7	1	23	251	273	251	273	0.98
6	17	0.048	0.67	10.6	0.6	1	23	278	300	278	300	0.98
7	17	0.0012	0.017	15.7	2.4	1	23	305	327	305	327	0.99
8	17	0.001	0.015	15.9	1.1	1	23	332	354	332	354	0.99
9	17	0.007	0.099	13.3	1.4	1	23	359	381	359	381	0.98
10	17	0.4	5.7	7.7	0.3	1	23	386	408	386	408	0.98
11	17	0.00013	0.0018	18.8	1.3	1	23	413	435	413	435	0.99
12	17	0.063	0.89	10.3	0.2	1	23	440	462	440	462	0.98
13	17	0.0064	0.091	13.4	4.1	1	23	467	489	467	489	0.99
14	17	0.008	0.11	13.1	1.1	1	23	494	516	494	516	0.98
15	17	0.00096	0.014	16.0	4.1	1	23	521	543	521	543	0.99
16	17	0.0042	0.059	14.0	2.7	1	23	548	570	548	570	0.99
17	17	0.72	10	6.9	4.4	1	23	575	597	575	599	0.98

Sequence Information

Coding Sequence: atggatgtTCATTCCATCAGAAGTTCTGAAATAAAATCCGAAGTTGTTTTAAcacaaacattttcattttgtggaAATTATGAAGattgtggGAGTCAAGAACTGAAAACGGAACCAGAAGATTATGACGAATCGTTTCAATGTAAGCAATATGATGCTGCAGAGGACATAGATGCAAATGCTGGTTCCATACAGCATTATTGTAATGAGTGTAATTGTACGAAAACGGAAAGAGATCCTCtaatagaacatttgaaaattactagCAAAGATCAATATAGTCAATGTAACTTTAAACCGCATTTAGAATCTTCTAAAATAGAGCATTTGGGAATTCACAATGTagtaggtaataaaaatgtagaagACTGTACGACACCATGGATTTTCTCTTTAAGATCACAGCTCAAAACTCGTGGCATCAAATATatgtgtaatgaatgtaattataccacattaaaaaaaaatgatctaaggagacatgtaaaaattcatataggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaatatcgtctaaagcaacatttaaaaattcatacaggtgatgaatataagtgtgaagaatgtggttataaaacagtgcgaaaatatCTTCTAaaccaacatttaaaaattcatgcaggcgataaatataagtgtaaagaatgtgattataaaacagtatggaaagcTCTTCtcaagcaacatgtcaaaattcatgcaggtgatgaatataagtgcaaagaatgtgattataaaacgctgcggaaaagttatctaatggaacatgttaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtatggaaagctcttctaaaggaacatgtcaaagttcatgcaggtgatgaatataagtgcaaagaatgtgattataaaacggtgcgaAAAGGGTGTCTGatggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgtggaaaagttcTCTAatgaaacatataaaaattcacgCAGGTGATGATtataagtgtacagaatgtgattataaaacattacgCAAAAGTTATCTAatggaacatgttaaaattcatacaggtgaagagtataagtgtaaagcatgtgattataaaacagtatggaaagcTCTTCTAAAGGAGCATGTCAAAGTTCAtgcaggtgacgaatataagtgcaaagaatgtgattataaaacagtgcggaaaagtTATCTAttggaacatgttaaaattcacacaggtgatgaatataagtgtgaagaatgtgattataaaacagtatggaaagctcttctaaaggaacatgccAAAGTTCATGCAGGCAacgaatataagtgcaaagaatgtaattataaaacagtacggaaaagGTGTCTAatggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgatttcaAGACAGCGTGGAAAAGTTCTCTaatgaaacatgtaaaaattcacacaggtaatgaatataagtgtaaagaatgtgattataaaacagtgcggaaatgTCTtcttaatcaacatttaaagaTTCATAgaagtgatgaatataaatgtaaagaatgtaattataaaacaccatggaattcatatttaaaatctCACATGAAAAAACATTCAGGTGTTTTATACACCTGCAAGGAAtgtgaatttaaaacaaattggaaATGTAgtcttaaaaaacatttaaaaattcacactAATCTAcactag
Protein Sequence: MDVHSIRSSEIKSEVVLTQTFSFCGNYEDCGSQELKTEPEDYDESFQCKQYDAAEDIDANAGSIQHYCNECNCTKTERDPLIEHLKITSKDQYSQCNFKPHLESSKIEHLGIHNVVGNKNVEDCTTPWIFSLRSQLKTRGIKYMCNECNYTTLKKNDLRRHVKIHIGDEYKCEECDYKTVWKYRLKQHLKIHTGDEYKCEECGYKTVRKYLLNQHLKIHAGDKYKCKECDYKTVWKALLKQHVKIHAGDEYKCKECDYKTLRKSYLMEHVKIHTGDEYKCKQCDYKTVWKALLKEHVKVHAGDEYKCKECDYKTVRKGCLMEHVKIHTGDEYKCKECDYKTVWKSSLMKHIKIHAGDDYKCTECDYKTLRKSYLMEHVKIHTGEEYKCKACDYKTVWKALLKEHVKVHAGDEYKCKECDYKTVRKSYLLEHVKIHTGDEYKCEECDYKTVWKALLKEHAKVHAGNEYKCKECNYKTVRKRCLMEHVKIHTGDEYKCKECDFKTAWKSSLMKHVKIHTGNEYKCKECDYKTVRKCLLNQHLKIHRSDEYKCKECNYKTPWNSYLKSHMKKHSGVLYTCKECEFKTNWKCSLKKHLKIHTNLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -