Lyun009387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001723.1:253030-255493[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0091 0.13 12.9 0.7 1 23 64 86 64 86 0.98
2 22 0.00016 0.0023 18.4 1.6 1 23 90 112 90 112 0.99
3 22 0.065 0.92 10.2 2.8 1 19 117 135 117 136 0.98
4 22 9.5 1.3e+02 3.4 1.5 1 23 143 165 143 165 0.95
5 22 1.3 18 6.1 2.0 1 23 170 192 170 192 0.98
6 22 0.0017 0.024 15.2 2.7 1 23 197 219 197 219 0.98
7 22 9.7e-05 0.0014 19.1 2.0 1 23 224 246 224 246 0.99
8 22 0.4 5.7 7.7 0.9 1 23 251 273 251 273 0.97
9 22 4.5e-05 0.00064 20.2 3.0 1 23 278 300 278 300 0.99
10 22 0.74 10 6.9 1.5 1 23 305 327 305 327 0.98
11 22 1.3 18 6.1 2.0 1 23 332 354 332 354 0.98
12 22 0.61 8.6 7.2 0.7 1 21 359 379 359 380 0.92
13 22 0.084 1.2 9.9 1.7 1 23 411 433 411 433 0.98
14 22 0.17 2.4 8.9 1.0 1 23 465 487 465 487 0.98
15 22 0.21 2.9 8.6 1.1 1 23 492 514 492 514 0.97
16 22 0.68 9.6 7.0 1.0 1 21 519 539 519 540 0.92
17 22 1.2 17 6.2 2.1 1 23 547 569 547 569 0.96
18 22 9.9e-06 0.00014 22.2 1.2 1 23 578 600 578 600 0.99
19 22 0.084 1.2 9.9 1.7 1 23 605 627 605 627 0.98
20 22 0.00017 0.0024 18.3 1.8 1 23 659 681 659 681 0.98
21 22 6.1e-05 0.00086 19.7 1.0 1 23 686 708 686 708 0.99
22 22 0.018 0.26 11.9 1.1 1 23 713 735 713 735 0.98

Sequence Information

Coding Sequence
atggaTGTCCaatgtaatgaaagttattcaataaaatcggaagtggttttaaatgaaacatttaacTTTTGTGGAAACAATGCAGATTATGGAAGTGAAGAATTGAAAGTGGAGCCAGTAGATTTTGAAGCAGCTTCTAAATGGGAAAGAGATATTCATATGGAGCACATTGAGAGATCCAAATgtgaatatatttgtaatgaatgtaattataaaacacaggGGAAACTGAATCTAATGACACATATGGAAACTCATgttgatgaatataagtgtaaggactgtgactataaaacagtgaagaAAGTGTTATTTAAAGCACACATCAGAATGCATACTgctaatgaatataaatgtaaggaatgtgactacaaaacaccacAGCAGCAATATTTTAAGAAACACAATCCATACTGCTattatgaatataagtgtaaagaatgtatctacaaaacaccatggaagcagaattttaaggaacatgtaaaaatgcATACTGAggatgagtataaatgtaaagaatgttactacaaaacaccatggcaGAAGAGTtttaaggaacatgtaaaaattcataccggtaaTGAccataaatgtaatgaatgcgaCTACAAAACACCACGGAAGCAGACTcttaaggaacatgtaaaaatccatactggtggtgaatataaatgtaatgaatgtgaatACAAAACAGTGAGGAAATATCTACTTAAAACACACCTTAGAATCCATActggtaataaatataaatgtaaggaatgtgactaccaAACACCATGGCAGCAGACTtttaaggaacatgtaaaaatccatactgatgataaatataaatgtaatgaatgcgactataaaacagtgaggaaatgTCAACTTAAAGCACATAttagaatccatactggtgatgaatataagtgtaaagaatgtgtgtacaaaacaccatggaagcagaattttaaggaacatgtaaaaatgcATACAGGggatgagtataaatgtaaagaatgttactacaaaacaccatggcaGAAGAGTtttaaggaacatgtaaaaattcatagtgatgatgaatataaatgtaatgaatgcgactacaaaacaccatggaagcagaCTTTTAAGGAACATATAAAATCCATACTGAAGATGAATATagatgtaatgaatgtgactataaatcaCCCTGGAAGCGGACTTTTAAGGAACATAATCCATACTGGTAAGGattataagtgtaaggaatgtgactacaaaacaccatggacgCAGAATTTTAAGAGACAtgtaaaaatccatactggtgatggatataaatgtaatgaatttgACTATTCAACAGTGTGGGAAGGTCTATTTAAAGGACACActagaatccatactggtgatgaatataagtgtaaagaatgtgtgtacaaaacaccatggaagcagaatttaaaggaacatgtaaaaatgcATACTGGggatgagtataaatgtaatgaatgtgactataaaacacccTGGAAGCAGACTtttaaggaacatgtaaaaatccatactggtgatgaatataagtgtaaggaatgcgactacaaaacaccatggaagcagacttttaaggaacatataaaatccatactggtgatgaagatacataaatgtaatgaatgtgactataaaacacccTGGAAGCAGACTTTTACGGAACATGTAAAGATTCATACTGATTATCAATATAAGcgtgaatataaatgtaatgaatgtgactataaaacagggAGGAAATATCAACTTAAAGCACACATTAGAATCCATACTGGTAAGGattataagtgtaaggaatgtgactacaaaacaccatggacgCAGAATTTTAAGAGACAtgtaaaaatccatactggtgatggatataaatgtaatgaatttgACTATTCAACAGTGTGGGAAGGTCTATTTAAAGGACACActagaatccatactggtgatgtatataagtgtaaagaatgtgactacaaaacaccacggaagcagaatttaaaggaacatgtaaaattGCATACTGGggatgagtataaatgtaatgaatgtgactataaaacagtgaggaaagatCTATTTAAAGCACACGTCAGagtccatactggtgatgaatataagtgtaaggaatgtgactacaaaacaccatggacaCAGAATCTTAAGAGGCAtgtaaaaatccatactggtgatgaagaTACATAA
Protein Sequence
MDVQCNESYSIKSEVVLNETFNFCGNNADYGSEELKVEPVDFEAASKWERDIHMEHIERSKCEYICNECNYKTQGKLNLMTHMETHVDEYKCKDCDYKTVKKVLFKAHIRMHTANEYKCKECDYKTPQQQYFKKHNPYCYYEYKCKECIYKTPWKQNFKEHVKMHTEDEYKCKECYYKTPWQKSFKEHVKIHTGNDHKCNECDYKTPRKQTLKEHVKIHTGGEYKCNECEYKTVRKYLLKTHLRIHTGNKYKCKECDYQTPWQQTFKEHVKIHTDDKYKCNECDYKTVRKCQLKAHIRIHTGDEYKCKECVYKTPWKQNFKEHVKMHTGDEYKCKECYYKTPWQKSFKEHVKIHSDDEYKCNECDYKTPWKQTFKEHIKSILKMNIDVMNVTINHPGSGLLRNIIHTGKDYKCKECDYKTPWTQNFKRHVKIHTGDGYKCNEFDYSTVWEGLFKGHTRIHTGDEYKCKECVYKTPWKQNLKEHVKMHTGDEYKCNECDYKTPWKQTFKEHVKIHTGDEYKCKECDYKTPWKQTFKEHIKSILVMKIHKCNECDYKTPWKQTFTEHVKIHTDYQYKREYKCNECDYKTGRKYQLKAHIRIHTGKDYKCKECDYKTPWTQNFKRHVKIHTGDGYKCNEFDYSTVWEGLFKGHTRIHTGDVYKCKECDYKTPRKQNLKEHVKLHTGDEYKCNECDYKTVRKDLFKAHVRVHTGDEYKCKECDYKTPWTQNLKRHVKIHTGDEDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-