Lyun019293.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002652.1:226986-245772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.091 1.3 9.8 0.1 1 22 67 88 67 88 0.95 2 32 0.024 0.35 11.5 1.1 1 23 151 173 151 173 0.98 3 32 0.00022 0.0031 18.0 0.9 1 23 205 227 205 227 0.99 4 32 0.01 0.14 12.8 1.7 1 23 259 281 259 281 0.98 5 32 0.018 0.25 12.0 1.7 1 23 286 308 286 308 0.97 6 32 0.047 0.66 10.7 1.7 1 23 313 335 313 335 0.98 7 32 4 56 4.6 5.4 1 23 340 362 340 362 0.98 8 32 1e-05 0.00014 22.2 1.8 1 23 367 389 367 389 0.99 9 32 0.091 1.3 9.8 0.1 1 22 468 489 468 489 0.95 10 32 0.25 3.6 8.4 0.9 1 23 584 606 584 606 0.98 11 32 0.39 5.5 7.8 2.2 1 23 611 633 611 633 0.98 12 32 0.029 0.41 11.3 0.9 1 23 638 660 638 660 0.98 13 32 0.00055 0.0078 16.7 2.8 1 23 665 687 665 687 0.98 14 32 0.075 1.1 10.0 1.6 1 23 692 714 692 714 0.98 15 32 0.16 2.3 9.0 1.4 1 23 719 741 719 741 0.98 16 32 0.0026 0.037 14.6 1.8 1 23 746 768 746 768 0.98 17 32 9.7 1.4e+02 3.4 1.1 3 23 775 795 773 795 0.96 18 32 0.054 0.77 10.5 2.6 1 23 800 822 800 822 0.98 19 32 0.54 7.7 7.3 4.0 1 23 827 849 827 849 0.98 20 32 0.03 0.43 11.3 0.7 1 23 854 876 854 876 0.98 21 32 0.66 9.4 7.0 3.2 1 23 905 927 905 927 0.98 22 32 0.091 1.3 9.8 0.1 1 22 1014 1035 1014 1035 0.95 23 32 0.011 0.15 12.7 1.1 1 23 1098 1120 1098 1120 0.98 24 32 0.00015 0.0021 18.5 2.2 1 23 1125 1147 1125 1147 0.99 25 32 0.0049 0.069 13.8 2.8 1 23 1152 1174 1152 1174 0.98 26 32 0.029 0.41 11.3 2.2 1 23 1179 1201 1179 1201 0.98 27 32 5.5 79 4.1 3.0 1 23 1206 1228 1206 1228 0.93 28 32 0.025 0.36 11.5 1.3 1 23 1233 1255 1233 1255 0.98 29 32 0.042 0.59 10.8 0.8 1 23 1260 1282 1260 1282 0.98 30 32 0.21 3 8.6 1.6 1 23 1287 1309 1287 1309 0.97 31 32 0.69 9.8 7.0 0.7 1 23 1314 1336 1314 1336 0.96 32 32 0.064 0.9 10.2 0.8 1 23 1341 1363 1341 1363 0.98
Sequence Information
- Coding Sequence
- aTGGATGTCGATTATAAAGAAAGTTTTCCCATTAAAACAGAAGTGGTTGTAGAGGAAACATTTTCCTATTGTGTAAAATCTGACgTTTATGGGAATGAATTGAAAATTGAGACAGTAGATTTCGATGCATCTCTTAAATGCAAAGAAGAAGATAATCTTGACGGGCTCCCTGATACATGTGGTGTACCCATACATCAttacatttgtaatgaatgtaattttattacaacagagaaagattctctaatagaacatttgaaaatgactaaaaatgttcaatattattGTAAGGAATGTAGCTTTAAAACTCTATTTAGATGTTTGATAAAAGAGCACTTTTGGATTCATAGCAGTGTTGGTTGTACAAGTTTTCCTAAAAAGTGTAATATTAAAAGgtcacaaattttgtttttagcaccacagttaaaaattccaaaaagtGGCGATAAGTATACTTGTAAGGAGTgtgattatgaaacaaagtGGAAACggaatctaaaggaacatgttaaaattcacactggtgatgaatataagtgtaaggaatgtaattataaaacactgtggattcaaaatctaaaaatgcatatgaaaattcatactggtgatgaatacaagtgtaaagaatgtgactataaaactgtaagaaaagatAGTCTGatggaacatgtgaaaattcatactggcgaaAAATATAACTGTACagaatgtgagtataaaacaccatggagacagtgtctaaaggaacatgtgaatattcatactggtgatgaatataaatgtaaggaatgtgattatagaacaACTTGGAAACggaatctaaaggaacatgtgaaaattcatactggtgatgtatataagtgtaaggaatgcgattataaaacctTACGGAACCGGAATTTAAAAGAACATGGGAGAATTCATAccggtgacgaatataagtgtatggaatgtgattataaaacactacgGAAACggaatctaaaggaacatgagAGAATTCATagtgatgatgaatataagtgtgaggaatgtcattataaaacacGGTGGAAAAGATGTCTAaatgaacatgtaaaaattcatactggagatgaatataagtgtaaggaatgtgactataaaacagcgaggaaaggtaatctaaagaggcatttgaaaattcatatgaGTAGTAAATATATTCCATTTTGGTCTATAATGGATGACTATTATAACGAAAGCTTTCCCATTAAATCAGAAGTGTTTGTAGAGGAAACGTTTTCTTATTGTGGAAAATCAGAAGattgtgaGAATGAAGAATTGAAAGCGGAGCAAGTAGAATTTGATGCATCTCttaaatatgaagaaaaagGTAATCTTGATGAGCTCATTGGTACATGTGGAGTACCCATACATCAttacatttgtaatgaatgtaattttattacaactgaaaaagattctctaatagaacatttgaaaatgactaaaaatcttcaatatttttgtaaggaatgcAGCTTTAAAACTCCATATGAATGTTCGATAAAAGAGCATTTCTGGATTCATAACAGAGTTGagccACAGTTCAAAATTCCAAAAAGTAGCGACAAATATACTcctaaggaatgtgattataaaacaaagtggaaacagagtctaaatgAACATGTGAATATTCACACCGGTGTGGAATATAAGTGTGATGAAGGTGATTATAACACACagaatctaaaggaacacatgAAAATTTATACTGGTGATGATTATAAGTGtatggaatgtgattataaaacacggtGGAAACGGAGTCTAAATGACCATGTAAacattcatactggtgatgagtataagtgcaagaaatgtgattataaaacaccatggagaCAAAGGCTAAAgctacatatgaaaattcatactaatgaagaatataagtgtgaggaatgtgattataaaacacgatggaaacagaatctaaaggaacatgcgaaaattcacactggtgatgaatataagtgcaaagaatgtaattataaaacaacacggaaacaaaatctaaaggaacatgggaaaattcatactggtgatgaatataaatgtaaccaatgtgattataaaacaacatggaaacagaatctaaaggaacatgggaaagttcatactggtgaaaaatataagtgtaaggaatgtgattatacaaCATTGTGgaaccaaaatctaaaaatacatATGAAAAGTCATAGAGGTGATGAACATAAGTGTgatcaatgtgattataaaactgtgagGAAAGATAGTCTCatggaacatgtaaaaattcatactggcgaaAGATATGGGTGtcaagaatgtgactataaaacaccatggagacagtgtctaaaggaacatcaaAATGTTCAtattggtgatgaatataagtgtaaggaatgtgattataaaacactacgGAAACgatatctaaaggaacatgagaggatccatactggtgatgagtataagtgtaaggaatgtgattacaaaacacgGTGGAAAAAGTGTCTAAATgatcatgtaaaaattcatactggagatgaatataagtgtaaggactgtgattataaaacaccctgGAGACAGAATTTAagggaacatgtgaaaattcatattgATGTTAAATGTAAGTCGAAGGaatatgattataaaacatGGAATTTAAAGAAACATGAGGAAATTCATATTGGTGATGAATATtcgtgtaaggaatgtgattataaaaccagGTGGAAAAAGTATCTACATGttcatgtgaaaattcatagcgGAGATGAACAtatgtgtaaggaatgtgattataaaactgtgtggaaagcTATAATGGATGTCAATTATAATGAAAGTTTTCCCATTAAATCGGAAGTGATTGTAGAGGAAACATTTTCCTATTGTGGACAATCTAAAgAGTGTGGgaatgaagaattgaaaatgGAGCCAATAGATTTTGACGCATCTCCTAAATATGAAGAAGCAGATGATCTTGATGAGCCCACTGATAATTGTAGTGTACCCATACATCAttacatttgtaatgaatgtaattttattacaacggagaaagattctctaatagaacatttgaaaatgactaaaaatgttcaatatttttgcaaGGAATGTAGCTTTAAAACTCCTCTTGAATGTTTAATCAAAGAGCATTTCAGCATTCATAATGGAGTTGGTTGTAAACGTATTACTAAAAATGGTAATAGTAAAACatcacaaattttctttttagcgCCACAGTTAAAGAATTCAAAAAGTGGTGGTAAATATacttgtaatgaatgtgattataaaacgctgcagaaccaaaatctaaaaatacatttgaaaattcatagaggtgatgaatataagtgtaatgaatgtaactataaaagtataaggaaatataatttgatgaaacacgtgaaaattcatagtggcgAAAGATATagctgtaaagaatgtgactatacaACACCTAGGAGACAatgtctaaagcaacatgtgaatattcataccggtgatgaatataggtgtaagaaatgtgattataaaacactacgAAAACGGAATCTAGAAGAACATGAGAGAATTCATACTGGGGAcgagtataagtgtaaggaatgtgattataaaacacagtggaAAAACTGTCTAAATGaacatgcaaaaattcatagtggagatgaatacaagtgtaaggaatgtgattataaaacaccgtgGAGACggaatctaaagcaacatgtgaaaattcatactgatgatgaatataaatgtaaagaatgtgattataaaacaccatggagacagaatctaaaggaacatgtgaaaattcatactggtgatgaatatacatgtaaggaatgtggttttaaaacaatgtggaaacagaatttaaagaaacatgGGAAAATTCATACTgctgatgaatataaatgcaaggaatgtgattttaaaacgcGGTGGGAGAAGTATTTAATAGTTCATGCGAAAATTCATACTGGAAATGATTATATGTGTCGAAAGTGCGactataaaactgtgtggaTAGGTAATCTAAAGcggcatatgaaaattcatgaGTAG
- Protein Sequence
- MDVDYKESFPIKTEVVVEETFSYCVKSDVYGNELKIETVDFDASLKCKEEDNLDGLPDTCGVPIHHYICNECNFITTEKDSLIEHLKMTKNVQYYCKECSFKTLFRCLIKEHFWIHSSVGCTSFPKKCNIKRSQILFLAPQLKIPKSGDKYTCKECDYETKWKRNLKEHVKIHTGDEYKCKECNYKTLWIQNLKMHMKIHTGDEYKCKECDYKTVRKDSLMEHVKIHTGEKYNCTECEYKTPWRQCLKEHVNIHTGDEYKCKECDYRTTWKRNLKEHVKIHTGDVYKCKECDYKTLRNRNLKEHGRIHTGDEYKCMECDYKTLRKRNLKEHERIHSDDEYKCEECHYKTRWKRCLNEHVKIHTGDEYKCKECDYKTARKGNLKRHLKIHMSSKYIPFWSIMDDYYNESFPIKSEVFVEETFSYCGKSEDCENEELKAEQVEFDASLKYEEKGNLDELIGTCGVPIHHYICNECNFITTEKDSLIEHLKMTKNLQYFCKECSFKTPYECSIKEHFWIHNRVEPQFKIPKSSDKYTPKECDYKTKWKQSLNEHVNIHTGVEYKCDEGDYNTQNLKEHMKIYTGDDYKCMECDYKTRWKRSLNDHVNIHTGDEYKCKKCDYKTPWRQRLKLHMKIHTNEEYKCEECDYKTRWKQNLKEHAKIHTGDEYKCKECNYKTTRKQNLKEHGKIHTGDEYKCNQCDYKTTWKQNLKEHGKVHTGEKYKCKECDYTTLWNQNLKIHMKSHRGDEHKCDQCDYKTVRKDSLMEHVKIHTGERYGCQECDYKTPWRQCLKEHQNVHIGDEYKCKECDYKTLRKRYLKEHERIHTGDEYKCKECDYKTRWKKCLNDHVKIHTGDEYKCKDCDYKTPWRQNLREHVKIHIDVKCKSKEYDYKTWNLKKHEEIHIGDEYSCKECDYKTRWKKYLHVHVKIHSGDEHMCKECDYKTVWKAIMDVNYNESFPIKSEVIVEETFSYCGQSKECGNEELKMEPIDFDASPKYEEADDLDEPTDNCSVPIHHYICNECNFITTEKDSLIEHLKMTKNVQYFCKECSFKTPLECLIKEHFSIHNGVGCKRITKNGNSKTSQIFFLAPQLKNSKSGGKYTCNECDYKTLQNQNLKIHLKIHRGDEYKCNECNYKSIRKYNLMKHVKIHSGERYSCKECDYTTPRRQCLKQHVNIHTGDEYRCKKCDYKTLRKRNLEEHERIHTGDEYKCKECDYKTQWKNCLNEHAKIHSGDEYKCKECDYKTPWRRNLKQHVKIHTDDEYKCKECDYKTPWRQNLKEHVKIHTGDEYTCKECGFKTMWKQNLKKHGKIHTADEYKCKECDFKTRWEKYLIVHAKIHTGNDYMCRKCDYKTVWIGNLKRHMKIHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -