Lyun009460.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001756.1:103354-106562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 3.3 46 4.9 4.0 1 23 87 109 87 109 0.97 2 33 1.8 25 5.7 0.5 2 23 115 136 114 136 0.96 3 33 0.14 2 9.2 4.2 1 23 141 163 141 163 0.98 4 33 1.8 25 5.7 0.5 2 23 169 190 168 190 0.96 5 33 0.0088 0.13 12.9 1.6 1 23 195 217 195 217 0.98 6 33 0.43 6.1 7.6 4.5 1 23 222 244 222 244 0.99 7 33 1.8 25 5.7 0.5 2 23 250 271 249 271 0.96 8 33 0.14 2 9.2 4.2 1 23 276 298 276 298 0.98 9 33 1.8 25 5.7 1.3 2 23 304 325 303 325 0.96 10 33 0.012 0.17 12.5 1.5 1 23 330 352 330 352 0.98 11 33 0.023 0.32 11.6 0.4 1 23 384 406 384 406 0.98 12 33 7.4e-05 0.001 19.5 2.2 1 23 438 460 438 460 0.99 13 33 0.045 0.64 10.7 3.9 1 23 465 487 465 487 0.99 14 33 0.063 0.89 10.3 0.5 1 23 492 514 492 514 0.98 15 33 0.064 0.91 10.2 1.4 1 23 519 541 519 541 0.98 16 33 0.14 2 9.2 1.0 1 23 546 568 546 568 0.98 17 33 0.14 2 9.2 1.0 1 23 573 595 573 595 0.98 18 33 7.4e-05 0.001 19.5 2.2 1 23 600 622 600 622 0.99 19 33 0.045 0.64 10.7 3.9 1 23 627 649 627 649 0.99 20 33 0.063 0.89 10.3 0.5 1 23 654 676 654 676 0.98 21 33 0.21 2.9 8.6 1.3 1 23 681 703 681 703 0.98 22 33 2.5 35 5.2 1.1 1 23 708 730 708 730 0.89 23 33 0.35 5 7.9 1.1 1 23 735 757 735 757 0.98 24 33 0.04 0.56 10.9 0.7 1 23 762 784 762 784 0.98 25 33 0.16 2.2 9.0 2.3 1 23 789 811 789 811 0.98 26 33 0.05 0.71 10.6 0.7 1 23 816 838 816 838 0.98 27 33 0.04 0.56 10.9 0.7 1 23 843 865 843 865 0.98 28 33 0.0085 0.12 13.0 2.1 1 23 870 892 870 892 0.98 29 33 0.14 2 9.2 1.0 1 23 897 919 897 919 0.98 30 33 0.027 0.39 11.4 1.4 1 23 924 946 924 946 0.98 31 33 0.13 1.8 9.3 4.0 1 23 951 973 951 973 0.98 32 33 0.029 0.41 11.3 1.7 1 23 978 1000 978 1000 0.97 33 33 0.041 0.58 10.8 0.8 1 21 1005 1025 1005 1026 0.96
Sequence Information
- Coding Sequence
- ATGGACGTTGACTATGATGAAAGTTGCCCAATAAAATCGGAAGTAGttgtaaacgaaacattttcatacTTTGGAAAATATGAAGATTATGgtaataaagaattgaaaattgaGTCTCtaaattttgaagaagataTTCTTGGGGAGAAAACCATTATACATGATATATCCGTACATCAAGATATTcataatgaaagtaattttattaaagcagAGAAAGTTTCTCTAAATGAAcctttgcaaattaaaaatggtcAATATTTTTGtcaggaatgtgattataaaacaccgtggaaacactgtctaaaggaacatgtacgaattcacactggtgatgaacttaagtgtgaagaatgtgattataagacacCATGGAAGAAGAGACTAaaagaacatgtaaaaattcatactggtgatgaatataagtgcaaagaatgtgattataaaacactacgAAAGAACTGTCTAAAGGAACACGTAcgaattcacactggtgatgaacttaagtgtgaagaatgtgattataagacacCATGGAAGAAGAGACTAaaagaacatgtaaaaattcataccggtgatgaatataagtgtaaagaatgtgattacaaaacactgcggaaacagagtctaaatgAACATATCaagattcatactggtgatgaatataaatgtaaggaatgcgattataaaacaccgtggaaacactgtctaaaggaacacgtacgaattcacactggtgatgaacttaagtgtgaagaatgtgattataagacacCATGGAAGAAGAGACTAaaagaacatgtaaaaattcatactggtgatgaatataagtgcaaagaatgtgattataaaacactacgAAAGAACTGTCTAAAGGAACACGTAcgaattcacactggtgatgaacttaagtgtgaagaatgtgattataagacacCATGGAAGAATTGCCTAaaagaacatgtaaaaattcataccggtgatgaatataggtgtaaagaatgtgattacaaaacactgcggaaacagagtctaaatgAACATATCaagattcatactggtgatcaatataaatgtaatgaatgtaattataaaacactgtggaaacacagactaaaggaacatataaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaccatggaaaaagAGTTTAGAGGCGCATGTGAAAATCCATAGTCGTGAGGaatgtaagtgtaaagagtgtgattataaaacactgtggaaacacagactaaaggaacatataaaaattcatactggtgatgaatataaatgtaaggaatgcgattataaaacaccacgtAGGTACAATCTAAAGACGCATGTGAAAATTCACGCTGagaatgaatataagtgtaaagaatgtgattttaaaacacgtTGGAAACACAGTTTAAAGGAACATTTGagaattcacactggtgatgaatataagtgtcaaGAATGCAACTATAAGACACCATGGAAAAAGAGTTTAGAggcacatgtaaaaattcacactGCTAATGGATATacatgtaaggaatgtgattatataaCACCGCTGAAACATAGACTAAAGggacatataaaaattcatactggtgatgaatataaatgtaaggaatgcgattataaaacaccatggaaacagagactaaaggaacatataaaaattcatactggtgatgaatataaatgtaaggaatgcgattataaaacaccatggaaacagagactaaaggaacatataaaaattcatactggtaatgaatataagtgcaaagaatgtgactataaaacaccacGTAGGTACAATCTAAAGACGCATGTAAAAATTCACGCTGagaatgaatataagtgtaaagaatgtgattttaaaacacgtTGGAAACACAGTTTAAAGGAACATTTGagaattcacactggtgatgaatataagtgtcaaGAATGCAACTATAAGACACCATGGAAAAAGAGTTTAGAggcacatgtaaaaattcacactGCTAATGGATATacatgtaaggaatgtgattatataaCACCGCTGAAACATAGACTAAAGggacatgtaaaaattcatactggtgaggaatataagtgtaaagaatgtgattataaaacaccatggaaacagacTATAAAGGAACATTCAagaattcacactggtgatgaatatacatgtaaggaatgtaattataaaacaccatggaaacagagactaaaggaacatataaaaattcatactggtaatgaatataagtgcaaagaatgtgactataaaacaccatggaaacaaagtctaaaAGTACATGTGaagattcatactggtgatgaatataagtgtcaaGATTGTGACTATAAGACACCATGGAAAAAGTGTTTAAAggcacatgtaaaaattcacactggtgatgaatataagtgtggggaatgtgattataaaacgtcatggaaacagagtctaaaagaccatgtcaaaattcatactggtgatgcatataaatgtaaagagtgtgattataaaacaccatggaaacaaagtctaaaAGTACATGTGaagattcatactggtgatgaatatacatgtaaggaatgtaattataaaactttgCGGAAACGAAACCTACtagaacatatgaaaattcacactggtgatgaatataagtgtaaagaatgtgattataaaacaccatggaaacagagactaaaggaacatataaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacgtcatggaaacagagtctaaaagaccatgtcaaaattcatactggtgatgcatataaatgtaaagagtgtgattataaaacccgatggaaacatagtctaaaagaacatgtaaCTACTCATTCTGATGACAGGTATAACTGTcaggaatgtaattataaaactttgCGGAAACGAAACCTACtagaacatatgaaaattcacactggtgatgaatataagtgtaaaaattgtgattataaaacaccatggaaacagaatctacaGACACATATGAAaatcacactggtgatgaatataagtgtaaagaatgtgattataaaacaccgtgGAAACAGAATCTACAGACACATATGA
- Protein Sequence
- MDVDYDESCPIKSEVVVNETFSYFGKYEDYGNKELKIESLNFEEDILGEKTIIHDISVHQDIHNESNFIKAEKVSLNEPLQIKNGQYFCQECDYKTPWKHCLKEHVRIHTGDELKCEECDYKTPWKKRLKEHVKIHTGDEYKCKECDYKTLRKNCLKEHVRIHTGDELKCEECDYKTPWKKRLKEHVKIHTGDEYKCKECDYKTLRKQSLNEHIKIHTGDEYKCKECDYKTPWKHCLKEHVRIHTGDELKCEECDYKTPWKKRLKEHVKIHTGDEYKCKECDYKTLRKNCLKEHVRIHTGDELKCEECDYKTPWKNCLKEHVKIHTGDEYRCKECDYKTLRKQSLNEHIKIHTGDQYKCNECNYKTLWKHRLKEHIKIHTGDEYKCKECDYKTPWKKSLEAHVKIHSREECKCKECDYKTLWKHRLKEHIKIHTGDEYKCKECDYKTPRRYNLKTHVKIHAENEYKCKECDFKTRWKHSLKEHLRIHTGDEYKCQECNYKTPWKKSLEAHVKIHTANGYTCKECDYITPLKHRLKGHIKIHTGDEYKCKECDYKTPWKQRLKEHIKIHTGDEYKCKECDYKTPWKQRLKEHIKIHTGNEYKCKECDYKTPRRYNLKTHVKIHAENEYKCKECDFKTRWKHSLKEHLRIHTGDEYKCQECNYKTPWKKSLEAHVKIHTANGYTCKECDYITPLKHRLKGHVKIHTGEEYKCKECDYKTPWKQTIKEHSRIHTGDEYTCKECNYKTPWKQRLKEHIKIHTGNEYKCKECDYKTPWKQSLKVHVKIHTGDEYKCQDCDYKTPWKKCLKAHVKIHTGDEYKCGECDYKTSWKQSLKDHVKIHTGDAYKCKECDYKTPWKQSLKVHVKIHTGDEYTCKECNYKTLRKRNLLEHMKIHTGDEYKCKECDYKTPWKQRLKEHIKIHTGDEYKCKECDYKTSWKQSLKDHVKIHTGDAYKCKECDYKTRWKHSLKEHVTTHSDDRYNCQECNYKTLRKRNLLEHMKIHTGDEYKCKNCDYKTPWKQNLQTHMKITLVMNISVKNVIIKHRGNRIYRHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -