Lyun007079.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:2209260-2217497[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.16 2.2 9.0 0.0 1 21 67 87 67 88 0.95
2 40 0.00013 0.0019 18.7 3.6 1 23 219 241 219 241 0.99
3 40 0.97 14 6.5 1.0 1 23 246 268 246 268 0.96
4 40 0.24 3.4 8.4 2.2 1 23 273 295 273 295 0.98
5 40 0.0022 0.031 14.8 2.8 1 23 300 322 300 322 0.98
6 40 0.0022 0.031 14.8 2.8 1 23 327 349 327 349 0.98
7 40 0.21 3 8.6 2.6 1 23 354 376 354 376 0.98
8 40 0.0022 0.031 14.8 2.8 1 23 381 403 381 403 0.98
9 40 0.37 5.2 7.9 2.1 1 23 408 430 408 430 0.98
10 40 0.016 0.23 12.1 1.1 1 23 435 457 435 457 0.98
11 40 5.9e-05 0.00083 19.8 1.2 1 23 462 484 462 484 0.99
12 40 1.7 25 5.7 4.3 1 23 489 511 489 511 0.98
13 40 8e-05 0.0011 19.4 1.4 1 23 515 537 515 537 0.99
14 40 0.22 3.1 8.5 2.6 1 23 542 564 542 564 0.98
15 40 0.35 5 7.9 3.7 1 23 568 590 568 590 0.98
16 40 0.25 3.5 8.4 2.9 1 23 595 617 595 617 0.98
17 40 0.0083 0.12 13.0 1.7 1 23 622 644 622 644 0.99
18 40 0.26 3.6 8.3 3.4 1 23 648 670 648 670 0.98
19 40 0.26 3.6 8.3 3.4 1 23 674 696 674 696 0.98
20 40 0.26 3.6 8.3 3.4 1 23 700 722 700 722 0.98
21 40 0.26 3.6 8.3 3.4 1 23 726 748 726 748 0.98
22 40 0.26 3.6 8.3 3.4 1 23 752 774 752 774 0.98
23 40 0.26 3.6 8.3 3.4 1 23 778 800 778 800 0.98
24 40 0.26 3.6 8.3 3.4 1 23 804 826 804 826 0.98
25 40 0.26 3.6 8.3 3.4 1 23 830 852 830 852 0.98
26 40 0.26 3.6 8.3 3.4 1 23 856 878 856 878 0.98
27 40 0.26 3.6 8.3 3.4 1 23 882 904 882 904 0.98
28 40 0.26 3.6 8.3 3.4 1 23 908 930 908 930 0.98
29 40 0.26 3.6 8.3 3.4 1 23 934 956 934 956 0.98
30 40 0.26 3.6 8.3 3.4 1 23 960 982 960 982 0.98
31 40 0.26 3.6 8.3 3.4 1 23 986 1008 986 1008 0.98
32 40 0.26 3.6 8.3 3.4 1 23 1012 1034 1012 1034 0.98
33 40 0.26 3.6 8.3 3.4 1 23 1038 1060 1038 1060 0.98
34 40 0.26 3.6 8.3 3.4 1 23 1064 1086 1064 1086 0.98
35 40 0.26 3.6 8.3 3.4 1 23 1090 1112 1090 1112 0.98
36 40 0.26 3.6 8.3 3.4 1 23 1116 1138 1116 1138 0.98
37 40 0.26 3.6 8.3 3.4 1 23 1142 1164 1142 1164 0.98
38 40 0.26 3.6 8.3 3.4 1 23 1168 1190 1168 1190 0.98
39 40 0.26 3.6 8.3 3.4 1 23 1194 1216 1194 1216 0.98
40 40 0.26 3.6 8.3 3.4 1 23 1220 1242 1220 1242 0.98

Sequence Information

Coding Sequence
ATGGACGCCGTATATAATGAAAGTTACCCAttaaaatcagaagtgattgtaaatgaaacattttcctattatgaaaaatatggagACTCTGTGaatgaagaattgaaaacaGAACTGGTAGATTttgaagaatcttttaaatacaaaaaagaagataaTCTTGAAGAGCACACCTCACAAAGTATACCCGTGcaacaatatatttgtaacgaatgtaattttattgcaaCGGAGAaagattctctaatagaacatatgaaaattactaagaataaatatttttgcaaggaatgtaactttacaaccTTGTTAAAATGTTCTATAGAGCAGCATTTCAGGATTCATAGAAGGGTTGGTTGTAAACAGATCACTAAAAAACATAACCGTAAGATGTCCCAAATTTTAGCACCATGTACAAAAAATGGTGacgaatgtgattacaaaacacaaTGGTGTATGAAGAAACATGAAagaattcacactggtgatcaATATAAGTGTACCAAGTGTGATTTTAAAACGATATGGAAATGGAATTTCAAGGAACATGACAAAATTCATACCGATAGTGAATACAAGTGCatagaatgtaattataaaacagtgtggaaacagaatctaaaggaacacgtGGAAATTCATACTAATagggaatataagtgtaaggtatgtgattataaaacatcgcGGAAAcggagtctaaaggaacatttgaAAACTCACACTGGTGATctatataagtgtaatgaatgtgattataaaacaatatggaaatatAGAATAAcagaacatatgaaaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaatcATAGACTAACAGAACACATGAacattcatactggtgatgaatataactgtaaagagtgtgattataagacAATACGAAAAAATAGTCTATTGCAtcacataaaaattcatactggtgatgaatataactgtaaagagtgtgattataagacAATACGAAAAAATAGTCTATTGCAtcacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacataGACTAACAGAACACATGAacattcatactggtgatgaatataactgtaaagagtgtgattataagacAATACGAAAAAATAGTCTATTGCAtcacataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacataGACTAACAGAACACATAAACATTCATAGTAGTGATGAATATAgctgtaaggaatgtgattataaaacaatacgaaAACAAAGGTTAatggaacatgtaaaaattcatactggtgatcaatataagtgtaaggaatgtgattacaaaacagtacagaaaaaaaatctagcgcaacacataaaaattcataccggtgatcTGCATAAGTGTACCaagtgtgattttaaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATGCTGATCTatataagtgcaaggaatgtgattacaaaacagtacagaaaaaaaatctggtgcaacacataaaaattcataccggtgatcTATATAAGTGTACaaagtgtgattttaaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaaaatggaaacggagtctaaaggaacatgtgaaaattcacactgatgatctatataagtgcaaggaatgtgattataaaacaatatggaaacataGTCTAACACAGCACGAGAAAATTCAcagtggtgatgaatataagtgtaaggaatgtgattataaaacaatatggaaacagaatctaaaagTACATATGAAAAATCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataagtgcaaggaatgtgattataaaacaatatggaaacagagtctaaaggaacatatgaaaaatCATATTGAACTAcataaTTTATCACTTTTTGTCGGAACTTCATATCCAATGGGAAACAAACGTGGTGCGTATTTATCAAAACCAAAAGGTCGTAAAACGCAATTAaagcagaacaaaaaaaaaccagttgATGAGGAGTTTAGTGGTTCAAGTGATGGTGTTAGTGATTGTTCTGTTAATAATGATAACGAAGAAGATACTgaaTTGTTTGATCCCGGTGTGAGTTATGAGTGTTTAGAAGAAATAACTTTACCATTAAATATTCCACCAATATCGAGTAGGACCTTTTTCAAACATCAAGAAACAGTATATACTGgaaaagaagaaaagaaacagGTAATAGAAGCTGGCGAACTTGATGACAATGGGGTACCGATAATTACCGTTGCTGTTGATGGGACATGGTCAAAACGATCTTATAAGTCAAATTACAATGAGCCATTATTGGTTAGCGAACTAAAAAATGTTATCTTATATATGTCAATGAGTGCTATGGAAGTGAGAGTAATCGTAGATGGATTCAAGAAATCTATTGAGATGGATGGCttaatttacggaaaactaATAGGAGACAGAGATAGTAGTAAAAAAGCAATAGGGTGA
Protein Sequence
MDAVYNESYPLKSEVIVNETFSYYEKYGDSVNEELKTELVDFEESFKYKKEDNLEEHTSQSIPVQQYICNECNFIATEKDSLIEHMKITKNKYFCKECNFTTLLKCSIEQHFRIHRRVGCKQITKKHNRKMSQILAPCTKNGDECDYKTQWCMKKHERIHTGDQYKCTKCDFKTIWKWNFKEHDKIHTDSEYKCIECNYKTVWKQNLKEHVEIHTNREYKCKVCDYKTSRKRSLKEHLKTHTGDLYKCNECDYKTIWKYRITEHMKIHSGDEYKCKECDYKTIWNHRLTEHMNIHTGDEYNCKECDYKTIRKNSLLHHIKIHTGDEYNCKECDYKTIRKNSLLHHIKIHTGDEYKCKECDYKTIWKHRLTEHMNIHTGDEYNCKECDYKTIRKNSLLHHIKIHTGDEYKCKECDYKTIWKHRLTEHINIHSSDEYSCKECDYKTIRKQRLMEHVKIHTGDQYKCKECDYKTVQKKNLAQHIKIHTGDLHKCTKCDFKTIWKQSLKEHMKNHADLYKCKECDYKTVQKKNLVQHIKIHTGDLYKCTKCDFKTIWKQSLKEHMKNHIELHKCKECDYKTKWKRSLKEHVKIHTDDLYKCKECDYKTIWKHSLTQHEKIHSGDEYKCKECDYKTIWKQNLKVHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHKCKECDYKTIWKQSLKEHMKNHIELHNLSLFVGTSYPMGNKRGAYLSKPKGRKTQLKQNKKKPVDEEFSGSSDGVSDCSVNNDNEEDTELFDPGVSYECLEEITLPLNIPPISSRTFFKHQETVYTGKEEKKQVIEAGELDDNGVPIITVAVDGTWSKRSYKSNYNEPLLVSELKNVILYMSMSAMEVRVIVDGFKKSIEMDGLIYGKLIGDRDSSKKAIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-