Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002464.1:756217-758202[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1 15 6.4 0.2 1 22 68 89 68 89 0.95

2 14 0.0019 0.027 15.0 1.0 1 23 179 201 179 201 0.97

3 14 0.0088 0.12 12.9 0.7 1 23 233 255 233 255 0.98

4 14 0.0088 0.12 12.9 0.7 1 23 287 309 287 309 0.98

5 14 2e-05 0.00029 21.2 1.3 1 23 314 336 314 336 0.99

6 14 4.5e-05 0.00064 20.2 2.4 1 23 341 363 341 363 0.99

7 14 0.0036 0.051 14.2 1.2 1 23 368 390 368 390 0.98

8 14 0.017 0.25 12.0 1.2 1 23 395 417 395 417 0.98

9 14 1.5e-05 0.00021 21.7 1.4 1 23 422 444 422 444 0.99

10 14 4.5e-05 0.00064 20.2 2.4 1 23 449 471 449 471 0.99

11 14 0.0036 0.051 14.2 1.2 1 23 476 498 476 498 0.98

12 14 0.017 0.25 12.0 1.2 1 23 503 525 503 525 0.98

13 14 1.5e-05 0.00021 21.7 1.4 1 23 530 552 530 552 0.99

14 14 0.0022 0.032 14.8 2.9 1 23 557 579 557 579 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1	15	6.4	0.2	1	22	68	89	68	89	0.95
2	14	0.0019	0.027	15.0	1.0	1	23	179	201	179	201	0.97
3	14	0.0088	0.12	12.9	0.7	1	23	233	255	233	255	0.98
4	14	0.0088	0.12	12.9	0.7	1	23	287	309	287	309	0.98
5	14	2e-05	0.00029	21.2	1.3	1	23	314	336	314	336	0.99
6	14	4.5e-05	0.00064	20.2	2.4	1	23	341	363	341	363	0.99
7	14	0.0036	0.051	14.2	1.2	1	23	368	390	368	390	0.98
8	14	0.017	0.25	12.0	1.2	1	23	395	417	395	417	0.98
9	14	1.5e-05	0.00021	21.7	1.4	1	23	422	444	422	444	0.99
10	14	4.5e-05	0.00064	20.2	2.4	1	23	449	471	449	471	0.99
11	14	0.0036	0.051	14.2	1.2	1	23	476	498	476	498	0.98
12	14	0.017	0.25	12.0	1.2	1	23	503	525	503	525	0.98
13	14	1.5e-05	0.00021	21.7	1.4	1	23	530	552	530	552	0.99
14	14	0.0022	0.032	14.8	2.9	1	23	557	579	557	579	0.98

Sequence Information

Coding Sequence: ATGCTTGTACAATCAATTTATACAATGGATGTTAACTCTATTGaaagttttgcaattaaatCTGAAGTGaatttaacagaaacattttcgtTTTGTGGCGAATATAAAGattgtgaGACTGCAGAATTGAAAACTGAACCAATAAATTATGTAGAATCATTTAAATGTAAGGACGAAGATTATGCTGTTCCATTGCAACAATATTTCTGTAATGAGTGCAATTTTATCACAACGGAAATAAattctctaatagaacatttgaaaactactaaaaatgttgaatatttttgtaacaaatgtaactttaaaacctGGATGGAATGTTCTACAAAAGAGCACTTGAGGACTCACAATGAAGTATATATTAGATATATTCCCAAAGAACGTAATTTTAAGACACCATGGATTTTTTCATTGGTGCCACTGATAAAGACTCCAATAAGTGGTAAGCAATATGTTTGCaatcaatgtgattataaaacattgtggaaaaatagtctaaatgaacatgtcaaaattcatacaggtgaggaatataagtgtattgaatgtgattataaatcagcgcagaaaagtagtctaaagaatcatctcaaaattcacacaggtgatgaatataagtgtacagatTGTGAATATAAGACAGTGTGGAAACGTCTTCTGATGGATCATTGCAAAATTCATAGAGGTGATGAATAtacatgtaaagaatgtgattataaatcggTGTGGAAAAGTAGTCTGAacaatcatgtcaaaattcacataggtgatgaatataagtgtaaagattgtgaatATAAGACAGTGTGGAAACGTCTTCTGAAGGATCATTGCAAAATTCATAGAGATGATGAATAtacatgtaaagaatgtgattataaatcagtGTGGAAAAGTAGTCTGAacaatcatgtcaaaattcacacaggtgatgaatataggtgtaaagaatgtgattttaaaacagtacgaaaagataatttaaaggaacacattaaaattcacacgggtgataaatataagtgtaaagattgcaATTATAAATCGGTGCGGAAAAGTAGTCTGaagaatcatgtcaaaattcacacaggtgataaatataagtgtaaagattgcgATTATAAATCAGTGTGGAAAAGTAGTTTGaagaatcatgtcaaaattcatacaggtgatgaatataagtgtaaagattgcgATTATAAGTCAGTGTGGAAAAATAGTCTAaagaatcatgtcaaaattcacacagatgatgaatataagtgtaaggaatgtgattttaaaacagtacgaaaagataatttaaaggaacacattaaaattcacacgggtgataaatataagtgtaaagattgcaATTATAAATCGGTGCGGAAAAGTAGTCTGaagaatcatgtcaaaattcacacaggtgataaatataagtgtaaagattgcgATTATAAATCAGTGTGGAAAAGTAGTTTGaagaatcatgtcaaaattcatacaggtgatgaatataagtgtaaagattgcgATTATAAGTCAGTGTGGAAAAATAGTCTAAAGaatcatgtaaaaattcacacagatgatgaatataagtgtaaggaatgtgattttaaaacagtacgaaaagataatttaaaggaacacattaaaattcacacaggtgatgaatataattgTGAAGATTGCGATTATAAATCAGTGTCGAAATGTAGTCtgaagaaacatgtcaaaattcatacaggtaatgtgTATAAAGGTAAAGAATAG
Protein Sequence: MLVQSIYTMDVNSIESFAIKSEVNLTETFSFCGEYKDCETAELKTEPINYVESFKCKDEDYAVPLQQYFCNECNFITTEINSLIEHLKTTKNVEYFCNKCNFKTWMECSTKEHLRTHNEVYIRYIPKERNFKTPWIFSLVPLIKTPISGKQYVCNQCDYKTLWKNSLNEHVKIHTGEEYKCIECDYKSAQKSSLKNHLKIHTGDEYKCTDCEYKTVWKRLLMDHCKIHRGDEYTCKECDYKSVWKSSLNNHVKIHIGDEYKCKDCEYKTVWKRLLKDHCKIHRDDEYTCKECDYKSVWKSSLNNHVKIHTGDEYRCKECDFKTVRKDNLKEHIKIHTGDKYKCKDCNYKSVRKSSLKNHVKIHTGDKYKCKDCDYKSVWKSSLKNHVKIHTGDEYKCKDCDYKSVWKNSLKNHVKIHTDDEYKCKECDFKTVRKDNLKEHIKIHTGDKYKCKDCNYKSVRKSSLKNHVKIHTGDKYKCKDCDYKSVWKSSLKNHVKIHTGDEYKCKDCDYKSVWKNSLKNHVKIHTDDEYKCKECDFKTVRKDNLKEHIKIHTGDEYNCEDCDYKSVSKCSLKKHVKIHTGNVYKGKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -