Lyun003822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000602.1:392554-394242[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.13 1.9 9.2 1.2 1 23 143 165 143 165 0.98
2 15 0.026 0.37 11.5 2.9 1 23 170 192 170 192 0.98
3 15 0.00015 0.0021 18.5 1.7 1 23 197 219 197 219 0.99
4 15 0.0039 0.056 14.0 1.3 1 23 224 246 224 246 0.99
5 15 0.019 0.27 11.9 0.9 1 23 251 273 251 273 0.97
6 15 0.00051 0.0072 16.8 1.0 1 23 278 300 278 300 0.99
7 15 7.8e-05 0.0011 19.4 1.4 1 23 305 327 305 327 0.99
8 15 0.0002 0.0029 18.1 1.4 1 23 332 354 332 354 0.99
9 15 0.00011 0.0016 18.9 1.4 1 23 359 381 359 381 0.99
10 15 0.005 0.071 13.7 2.3 1 23 386 408 386 408 0.99
11 15 0.00062 0.0087 16.6 0.9 1 23 413 435 413 435 0.98
12 15 0.0051 0.072 13.7 3.7 1 23 440 462 440 462 0.98
13 15 2.7 38 5.1 0.7 2 23 468 489 467 489 0.94
14 15 1.8e-05 0.00026 21.4 2.9 1 23 494 516 494 516 0.99
15 15 0.0051 0.072 13.7 2.0 1 23 521 543 521 543 0.98

Sequence Information

Coding Sequence
aTGGATAttgattctattgaaaattgcaaaataaaatccgaagtaattttaacagaaacattttcatCTTGTGGGAAATACGAAGattgtgtTAATCTAGAATTGAAAACAGAACCTGaagaattgtttaaatgtaGGAAAGATGATTCTTCTGCAGAGCACTTGGATGCACATGCTCCAATGCAACATTATGAGTGTAATTCTACAGCACTGGAAAAAGACTCTCTAATaggacattttaaaattactaacaacgttcaatatttttgtgaggaatgtaattttaaaactcaGTCAGAATGTTTCATCAAAGAGCATTCAAGAATTCACAACCTAGTTGATGATAAATATATTATCgaagaatgtaatttaaagaCACAATTGAATTCCTCTAGACAATTTAAAACGCTAATAAGTGGTGACCAATATatgtgtaataaatgtaattataccacattAAAAGAGATTAATCTAAAACAACATGTTAAAATCCACAAAGGTACTCAATATTCTTGCGAGAAGTGTGACTATAAGACACATTTGAAACGTTATCTTACCGCACATGTtcgaattcatacaggtgatgaatataagtgtaaggaatgtaattataaaacagtgcggaaaaattATCTACAggcacatgtcaaaattcatacaggtgatgaatataagtgtaaggaatgtgattataaaacagtatggaaatatcttttaaagcaacacatcaaaattcacacaggtaatgaatataagtgtaaggaatgtgattacaaaacacttCGGGAAGatcttctaaagcaacatgctaaaattcatacaagtgctAAATATAAGTGTcaggaatgtaattataaaacagtgcggaaaattGATCTGAAGgaccatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgcggaaagagcttttaaagcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatcttctaaaggaacatgttaagattcatacaggcgatgaatataagtgtaatgaatgtaattataaaacagtgcggaaaagtTATTTGatggaacatgttaaaattcatacagatgacaaatataagtgtaaagaatgtgattataaaacagcgtggaaaagtcatctaaaagaacatgtcaaaattcatacaggtgatgaatataagtgcaatgaatgtgattacaaaacagtgcgaaaaaatcgtctaaaggaacatatcgaaattcatactggtgaagaatataagtgtaaggaatgtaattataaaacagtgcggacaCATCTTCTAAAACaacatgcaaaaattcataCTAGTGACGAATCTCaatgtaaagaatgcgattataaaacaatgtggaaaggtcgtctaaaggaacatgtcaaaattcatacagatggcGCATATAAGTGTAAGGACTGTGATTATAGAACACCAAGGAACACTTCTCTAAAATCACACATGAAAAGACATACAGGTGGTTTTTATACCTGTAAGGAATGTGAATTTAAGACAAATTGGAaaagtaatctacaaaaacatttgaaaattcatacataA
Protein Sequence
MDIDSIENCKIKSEVILTETFSSCGKYEDCVNLELKTEPEELFKCRKDDSSAEHLDAHAPMQHYECNSTALEKDSLIGHFKITNNVQYFCEECNFKTQSECFIKEHSRIHNLVDDKYIIEECNLKTQLNSSRQFKTLISGDQYMCNKCNYTTLKEINLKQHVKIHKGTQYSCEKCDYKTHLKRYLTAHVRIHTGDEYKCKECNYKTVRKNYLQAHVKIHTGDEYKCKECDYKTVWKYLLKQHIKIHTGNEYKCKECDYKTLREDLLKQHAKIHTSAKYKCQECNYKTVRKIDLKDHVKIHTGDEYKCKECDYKTVRKELLKQHVKIHTGDEYKCKECDYKTVRKNLLKEHVKIHTGDEYKCNECNYKTVRKSYLMEHVKIHTDDKYKCKECDYKTAWKSHLKEHVKIHTGDEYKCNECDYKTVRKNRLKEHIEIHTGEEYKCKECNYKTVRTHLLKQHAKIHTSDESQCKECDYKTMWKGRLKEHVKIHTDGAYKCKDCDYRTPRNTSLKSHMKRHTGGFYTCKECEFKTNWKSNLQKHLKIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-