Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000058.1:823731-825591[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.041 0.58 10.8 0.1 1 21 67 87 67 88 0.95

2 17 8.5 1.2e+02 3.5 0.5 1 17 146 162 146 163 0.83

3 17 0.028 0.39 11.4 2.2 3 23 168 190 167 190 0.92

4 17 1.9 26 5.6 0.1 5 23 199 217 198 217 0.95

5 17 0.00052 0.0074 16.8 5.6 1 23 222 244 222 244 0.99

6 17 0.00029 0.0042 17.6 1.1 1 23 249 271 249 271 0.99

7 17 0.054 0.77 10.5 1.4 1 23 276 298 276 298 0.98

8 17 0.26 3.7 8.3 1.4 1 23 303 325 303 325 0.96

9 17 1.4e-05 0.0002 21.7 1.5 1 23 330 352 330 352 0.99

10 17 0.00089 0.013 16.1 2.5 1 23 357 379 357 379 0.98

11 17 0.00091 0.013 16.0 1.4 1 23 384 406 384 406 0.98

12 17 0.00087 0.012 16.1 2.7 1 23 411 433 411 433 0.99

13 17 0.012 0.16 12.6 1.0 1 23 438 460 438 460 0.98

14 17 3.8e-05 0.00054 20.4 4.8 1 23 465 487 465 487 0.99

15 17 0.014 0.2 12.3 1.7 1 23 492 514 492 514 0.98

16 17 4.4e-06 6.3e-05 23.3 1.3 1 23 546 568 546 568 0.99

17 17 0.00081 0.011 16.2 2.5 1 23 573 597 573 597 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.041	0.58	10.8	0.1	1	21	67	87	67	88	0.95
2	17	8.5	1.2e+02	3.5	0.5	1	17	146	162	146	163	0.83
3	17	0.028	0.39	11.4	2.2	3	23	168	190	167	190	0.92
4	17	1.9	26	5.6	0.1	5	23	199	217	198	217	0.95
5	17	0.00052	0.0074	16.8	5.6	1	23	222	244	222	244	0.99
6	17	0.00029	0.0042	17.6	1.1	1	23	249	271	249	271	0.99
7	17	0.054	0.77	10.5	1.4	1	23	276	298	276	298	0.98
8	17	0.26	3.7	8.3	1.4	1	23	303	325	303	325	0.96
9	17	1.4e-05	0.0002	21.7	1.5	1	23	330	352	330	352	0.99
10	17	0.00089	0.013	16.1	2.5	1	23	357	379	357	379	0.98
11	17	0.00091	0.013	16.0	1.4	1	23	384	406	384	406	0.98
12	17	0.00087	0.012	16.1	2.7	1	23	411	433	411	433	0.99
13	17	0.012	0.16	12.6	1.0	1	23	438	460	438	460	0.98
14	17	3.8e-05	0.00054	20.4	4.8	1	23	465	487	465	487	0.99
15	17	0.014	0.2	12.3	1.7	1	23	492	514	492	514	0.98
16	17	4.4e-06	6.3e-05	23.3	1.3	1	23	546	568	546	568	0.99
17	17	0.00081	0.011	16.2	2.5	1	23	573	597	573	597	0.92

Sequence Information

Coding Sequence: ATGGATGTTGATTATAATGAAACTTGCCTGATAAAATCTGAAACTGTACAGGAAACATTTTCATATTGTGGAAATTATGAAGATTATGGGAATGAAGAATTGAAACAGGAGCtggtagaaatagaaaaatcttttaaatgggaAGAGGACGAAAATCTTGTGGACCTCACCGACCTACATGCTGTACCCGTACAACAGTATATTTGTAACGAATGTAGTTTTATGACAACGGAGAAAGATTCTTTAATACAACACttgaacattattaaaaatgtttgctatttttgcaaagaatgtaattttaaaacacattttggatGTTCGATAAAAGAGCATTTCAGAATTCATAACAGGGTTGTTTGTAaacatattactaaaaaatgtaattacaagACACCAAGAAGTTCCTCTTTGGCATCGCAAAGTGATAACGAACATATTtgtaagaaatgtgattataaaatacGACAGAAGCCGAGGTTAAAgaggtatttaaaaatttgtagtgatcatgaatgtgattataaaacggcgCAGAAACACAGTCTAATGGgtcatatgagaattcatactggtgatgaatataagagTGAGACATGCGACTATAAAATAATACGGAAACAGAGTTTAAcgggacatttaaaaattcatactggtgataaatataagtgcaaTGAATGTCATTATAGAACAACAAGGAAAAGGTATCTAAGgcaacatttacaaattcataGTGATCctgaatataagtgcaatgaatgtgattataaagcaaCGCAGAAGCAACGTCTAATGGatcatatgagaattcatactggtgatgaatataagtgtaaggaatgtgattttaaaacaatatggaaacagagtctgacatcacatttaaaaatccatactcgTAATGGATATAAGTGCactgaatgtgattacaaaacatcaTGGAAATTGagactaaaggaacatttaaaaattcatactggtgatgaatataagtgtactgaatgtgattataaaacagtgcggaaacaAAGTCTAACggaacatatgagaattcatactggtgatgaatataaatgtaagaaatgtgaatataaaacatCAAGGAAGCAGAcgctaaaggaacatttaataatccatactggtgatggaTATAAATGCAatgagtgtgattataaaacatcacggAGACAGagactaaaggaacatttaataattcatactggtgatggaTATAAGTGCAAtcaatgtgattacaaaacatcaCGGAAACAGAGACTacaggaacatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattttaaaacaccgtggaaacagaatctaaagcaacatttacaaattcataGTTAtcctgaatataagtgtaatgaatgtgattataaaactgcacGGAAACACCATCTAATGGATCATATGAGAAtacatactggtgatgaatataagtgtaaaaagtgtgattataaaacccaATGGAAAGCGAATCTAaaggtacatttaaaaattcatagtggtgatgaatataagtgtaatgaatctAATTTTATAACACCATGGAAACGGAATCTaaaacaacattttcaaaatcaaagttatcctgagtataagtgtaatgaatgtgattataaaacagcgcgAAAACGCAATCTAATGGatcatatgagaattcatactggtgttgaatataagtgtaagaaatgtggttataaaacacggtggaaaagtaatttaaataaacatattaaaattcgtATGCATGATAAACAGCTACAACtctaa
Protein Sequence: MDVDYNETCLIKSETVQETFSYCGNYEDYGNEELKQELVEIEKSFKWEEDENLVDLTDLHAVPVQQYICNECSFMTTEKDSLIQHLNIIKNVCYFCKECNFKTHFGCSIKEHFRIHNRVVCKHITKKCNYKTPRSSSLASQSDNEHICKKCDYKIRQKPRLKRYLKICSDHECDYKTAQKHSLMGHMRIHTGDEYKSETCDYKIIRKQSLTGHLKIHTGDKYKCNECHYRTTRKRYLRQHLQIHSDPEYKCNECDYKATQKQRLMDHMRIHTGDEYKCKECDFKTIWKQSLTSHLKIHTRNGYKCTECDYKTSWKLRLKEHLKIHTGDEYKCTECDYKTVRKQSLTEHMRIHTGDEYKCKKCEYKTSRKQTLKEHLIIHTGDGYKCNECDYKTSRRQRLKEHLIIHTGDGYKCNQCDYKTSRKQRLQEHLKIHTGDEYKCNECDFKTPWKQNLKQHLQIHSYPEYKCNECDYKTARKHHLMDHMRIHTGDEYKCKKCDYKTQWKANLKVHLKIHSGDEYKCNESNFITPWKRNLKQHFQNQSYPEYKCNECDYKTARKRNLMDHMRIHTGVEYKCKKCGYKTRWKSNLNKHIKIRMHDKQLQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -