Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001557.1:399645-401620[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.4 20 6.0 2.9 1 23 98 120 98 120 0.98

2 19 0.0014 0.02 15.4 2.0 1 23 152 174 152 174 0.98

3 19 0.098 1.4 9.6 1.2 1 23 179 201 179 201 0.98

4 19 0.016 0.23 12.1 2.0 1 23 206 228 206 228 0.98

5 19 1.2 17 6.2 2.6 1 23 233 255 233 255 0.95

6 19 0.025 0.35 11.5 1.3 1 23 260 282 260 282 0.98

7 19 0.0002 0.0029 18.1 1.1 1 23 287 309 287 309 0.99

8 19 0.054 0.76 10.5 3.2 1 23 314 336 314 336 0.96

9 19 6.2e-05 0.00088 19.7 3.5 1 23 341 363 341 363 0.99

10 19 0.23 3.2 8.5 4.7 1 23 368 390 368 390 0.99

11 19 5.4e-06 7.6e-05 23.1 2.0 1 23 395 417 395 417 0.99

12 19 0.29 4.1 8.2 2.9 1 23 422 444 422 444 0.98

13 19 0.0081 0.11 13.1 2.4 1 23 449 471 449 471 0.98

14 19 0.0072 0.1 13.2 2.5 1 23 476 498 476 498 0.98

15 19 0.027 0.38 11.4 2.4 1 23 503 525 503 525 0.98

16 19 0.034 0.48 11.1 0.9 1 23 530 552 530 552 0.98

17 19 0.29 4.1 8.2 2.1 1 23 557 579 557 579 0.98

18 19 0.0001 0.0014 19.0 2.3 1 23 584 606 584 606 0.99

19 19 4.7e-05 0.00066 20.1 1.5 1 23 611 634 611 634 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.4	20	6.0	2.9	1	23	98	120	98	120	0.98
2	19	0.0014	0.02	15.4	2.0	1	23	152	174	152	174	0.98
3	19	0.098	1.4	9.6	1.2	1	23	179	201	179	201	0.98
4	19	0.016	0.23	12.1	2.0	1	23	206	228	206	228	0.98
5	19	1.2	17	6.2	2.6	1	23	233	255	233	255	0.95
6	19	0.025	0.35	11.5	1.3	1	23	260	282	260	282	0.98
7	19	0.0002	0.0029	18.1	1.1	1	23	287	309	287	309	0.99
8	19	0.054	0.76	10.5	3.2	1	23	314	336	314	336	0.96
9	19	6.2e-05	0.00088	19.7	3.5	1	23	341	363	341	363	0.99
10	19	0.23	3.2	8.5	4.7	1	23	368	390	368	390	0.99
11	19	5.4e-06	7.6e-05	23.1	2.0	1	23	395	417	395	417	0.99
12	19	0.29	4.1	8.2	2.9	1	23	422	444	422	444	0.98
13	19	0.0081	0.11	13.1	2.4	1	23	449	471	449	471	0.98
14	19	0.0072	0.1	13.2	2.5	1	23	476	498	476	498	0.98
15	19	0.027	0.38	11.4	2.4	1	23	503	525	503	525	0.98
16	19	0.034	0.48	11.1	0.9	1	23	530	552	530	552	0.98
17	19	0.29	4.1	8.2	2.1	1	23	557	579	557	579	0.98
18	19	0.0001	0.0014	19.0	2.3	1	23	584	606	584	606	0.99
19	19	4.7e-05	0.00066	20.1	1.5	1	23	611	634	611	634	0.95

Sequence Information

Coding Sequence: ATGGATATCGACTCGGTAGACTCTATTGAAAgttgtgctataaaatcagaagtgattttaaccgagacattttctttttgtgggaagTATGAAGattGTACGAGTAAGGAACTTAAACAGGAGCCAGTAGATTACAAAGAATCGGTTAAACCTGAAGAAGAAAATGACGAGACAAAACTCATAGATACACATGCTGCTCTAATTCaacgaaatttttgtaatgattctaattttataacaattagaGAAAATTCTTTAATAGAACTTTTGAAAGTTACTGAGAGTGTTAAATACtcttgtaaggaatgtaactctACGACCCAGTTAGAATGTTCTCTAAAAGAGCATACGAGGATTCACAATGATGgatataatattgaagaatgtaattttatgaaaCCATATCTATTCTCTCTATCACCACAGTTGAAAACTCCAGAAAGTGCTAATGAATATGTTTGTAACgaatgtaattacaccacattgaacaaaaattatctaaaaaaacacATGAAGATTCACAAAAGTGCTACATATAGTTGCgacaaatgtgattataatacacGTTGGAAAAGTTACTTTACGGCACATGCTAAAATTCATTCTGGtagtgaatataagtgtaaagagtgtgattataaaacaatatggaaacacaatttaattcaacatgtcaaaattcacactggtgacaaatataagtgtaaagaatgtgattataaaacggtgtggaaaaattgtttaaatgatCATGCCAaacttcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacgatatggaaaagttatctaaaccaacatgtcaaaattcatacagacaacgaatataagtgtaaagagtgtgactataaaacagtacaagAAGGTTATCTAAAGCAGCacctcaaaattcatactggtgacaaatataagtgtaaagaatgtcatTATAAAGCATTTAGGATAGAGActttaaagcaacatgtcaaaattcatactggtgatgaatataagtgtaaagagtgtgattataaaacggtgcggaaaagtcatctaatgcaacatgtcaaaattcatagttGTGACAAATACAAGTGTAATGAATGTCATTAtacaacagtatggaaaaattgtttaaaggatcatatcaaaattcatacaggcgatgaatttaagtgtaaagagtgtgattataaaacggtacagaaaagtaatctaaagcaacacatcaaaattcatagttgtgataaatataagtgtaaagaatgtgattataaaacagtgtggaaaaattgtttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacggtatggaaaagccatctaatgcaacatgtcaaaattcatacaggtgacatatataagtgtaaagaatgtgattataaaactgtgtggaaaagtcatctaaaagaacatgtcaaaattcatactggcgaccaatataagtgtaaagaatgcggttataaaacagtgtggaaaagttgtctaatgcaacatgtcaaaattcatacaggtgacaaatataagtgtagagaatgcgattataaaacagtgtggaaaagagATCTAatgcgacatgtcaaaattcatacaggtgatgaatatacgtgcaatgaatgtgattataaaacagtgtggaaaaattgtttaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattttaaaactgtacggaaaagtgatctaaagcaacatgtcaaaattcatactggtgacaaatacaaatgtaaagaatgtgattttaaaactgtacagaaaagtaatctgaAGCGACATGTTCTAAACATTCATGCTGGTGACAATTATTAG
Protein Sequence: MDIDSVDSIESCAIKSEVILTETFSFCGKYEDCTSKELKQEPVDYKESVKPEEENDETKLIDTHAALIQRNFCNDSNFITIRENSLIELLKVTESVKYSCKECNSTTQLECSLKEHTRIHNDGYNIEECNFMKPYLFSLSPQLKTPESANEYVCNECNYTTLNKNYLKKHMKIHKSATYSCDKCDYNTRWKSYFTAHAKIHSGSEYKCKECDYKTIWKHNLIQHVKIHTGDKYKCKECDYKTVWKNCLNDHAKLHTGDEYKCKECDFKTIWKSYLNQHVKIHTDNEYKCKECDYKTVQEGYLKQHLKIHTGDKYKCKECHYKAFRIETLKQHVKIHTGDEYKCKECDYKTVRKSHLMQHVKIHSCDKYKCNECHYTTVWKNCLKDHIKIHTGDEFKCKECDYKTVQKSNLKQHIKIHSCDKYKCKECDYKTVWKNCLKEHVKIHTGDEYKCKECDYKTVWKSHLMQHVKIHTGDIYKCKECDYKTVWKSHLKEHVKIHTGDQYKCKECGYKTVWKSCLMQHVKIHTGDKYKCRECDYKTVWKRDLMRHVKIHTGDEYTCNECDYKTVWKNCLKEHVKIHTGDEYKCKECNFKTVRKSDLKQHVKIHTGDKYKCKECDFKTVQKSNLKRHVLNIHAGDNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -