Lyun000024.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:349369-355370[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5.1 73 4.2 3.2 13 23 153 163 137 163 0.79
2 16 0.00013 0.0018 18.7 2.0 1 23 173 195 173 195 0.99
3 16 0.0058 0.083 13.5 1.1 1 23 200 222 200 222 0.99
4 16 0.07 0.99 10.1 2.1 1 23 227 249 227 249 0.97
5 16 2.8e-05 0.0004 20.8 0.8 1 23 254 276 254 276 0.99
6 16 0.00086 0.012 16.1 2.0 1 23 281 303 281 303 0.98
7 16 1.1e-05 0.00015 22.1 1.6 1 23 308 330 308 330 0.99
8 16 0.00086 0.012 16.1 2.0 1 23 335 357 335 357 0.98
9 16 9.8e-05 0.0014 19.1 2.3 1 23 362 384 362 384 0.99
10 16 0.0085 0.12 13.0 0.8 1 23 389 411 389 411 0.99
11 16 0.00041 0.0058 17.1 4.6 1 23 416 438 416 438 0.99
12 16 7.6e-05 0.0011 19.4 1.8 1 23 443 465 443 465 0.99
13 16 0.011 0.16 12.6 1.0 1 17 470 486 470 487 0.96
14 16 0.0085 0.12 13.0 0.8 1 23 549 571 549 571 0.99
15 16 0.0063 0.09 13.4 0.3 5 23 580 598 579 598 0.96
16 16 1 15 6.4 0.6 1 14 603 616 603 619 0.87

Sequence Information

Coding Sequence
atggatGGTGATTCAATAGAAAATTGTGCAATTAAATccgaagtgattttaacagaaacatttacGTTTTCTGGAAAATACGAAGattatgTGAGTCAAGAACCGAAAACAGAACCAGAAGTTTATGaagatttgtttaaatgtaaagagAAGGATTCTGTAGAGCACATTGCTGTACATGCTGCTCCGAtgcaatgtattaatgaatgtaattttacaacaatGGAAAAGGATTGTATgatagaacatttgaaaatgattaaaaatgataattattctTGTGAGGAATGTAACTGTATAACGCAGTTAGAATGTTCCAAagagcatttaaaaattcacaacaCAGTCAATGGTCAATATACTATTAAGGGATGTAATTTTAACATACCAGAGCTCAAAACTACAagaatttgcaataaatacatttgtaataaatatatctgTACTGCATTCATCAAAAGTAATCTAAGgagacatataaaaattcataaaggtgatGACTATACttgtgacaaatataagtgtaaagaatgtgactatacaACAAGgcggaaaatttatttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaggtAGTCTAAagcaacacatcaaaattcatacaggtgatgaatataagtgtatcgggtgtgagtataaaacagtacggaaacATCaactaatgcaacatgtcaaaattcatataggtgatGATTATaagtgtgcagaatgtgattataaaacagtgcggaaaagtAGTTTAAAGGagcatatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaagcaGTACGAAAACATCAACTaatggaacatgtcaaaattcatacaggcgatgagtataagtgtaaagaatgtgattataaaacagtgcggaaaagtagtctaaaggagcatatcaaaattcatacaggtgacgaatataagtgtaaagagtgtgattataaagcaGTACGAAAACATCAACTaatggaacatgtcaaaattcatacaggtgatgagtataagtgtaaagaatgtgactataaaacaaggcggaaaatttatctaaaggaacatatcaaaattcatacaggcgatgaatataagtgtaaagaatgcaattataaaacagtgtggaaaggtagtctaaaggaacatatcaaaattcatatgggtgatgaatataaatgtaaaaaatgtgattataaaacagtgcacaAAAATGGACTAAAGcaacacatgaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcggaaaagtAGTCTAATGGAACAtaccaaaattcatacaggtgacgaatataagtgtaaagaatgtgattacaaaacagttcggaaaagtaatctaaagGaatatgtcaaaattcatacaggtgatgaatataaatataaagagtgtaattataaaactgtggaAAAGTCTACGAaagatgttaaaattcatacaggtgacaaatataagtgtaacaattataattatagaaCAGTGTGGAAaggtagtctaaaggaacataccaaaattcatacaggtgacgaatataagtgtaaagaatgcaattataaaacagtgtggaaaggtAGTCTAAAGGagcatatcaaaattcatacaggtgatgaatataaatataaagagtgtgattataaaacagtgcggaaaagtagtctaaaggagcatatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattacaaaacagttcggaaaaACGAAAACATTGCAGTGTTTGGGAAGATCTTTGACATTTTAGCAGAAGTTTTAAACAAGAAGAGTGGAGATTCATCCGCTGAAGAGGAGGAAGAGCTCTAA
Protein Sequence
MDGDSIENCAIKSEVILTETFTFSGKYEDYVSQEPKTEPEVYEDLFKCKEKDSVEHIAVHAAPMQCINECNFTTMEKDCMIEHLKMIKNDNYSCEECNCITQLECSKEHLKIHNTVNGQYTIKGCNFNIPELKTTRICNKYICNKYICTAFIKSNLRRHIKIHKGDDYTCDKYKCKECDYTTRRKIYLKEHVKIHTGDEYKCKECNYKTVWKGSLKQHIKIHTGDEYKCIGCEYKTVRKHQLMQHVKIHIGDDYKCAECDYKTVRKSSLKEHIKIHTGDEYKCKECDYKAVRKHQLMEHVKIHTGDEYKCKECDYKTVRKSSLKEHIKIHTGDEYKCKECDYKAVRKHQLMEHVKIHTGDEYKCKECDYKTRRKIYLKEHIKIHTGDEYKCKECNYKTVWKGSLKEHIKIHMGDEYKCKKCDYKTVHKNGLKQHMKIHTGDEYKCKECDYKTVRKSSLMEHTKIHTGDEYKCKECDYKTVRKSNLKEYVKIHTGDEYKYKECNYKTVEKSTKDVKIHTGDKYKCNNYNYRTVWKGSLKEHTKIHTGDEYKCKECNYKTVWKGSLKEHIKIHTGDEYKYKECDYKTVRKSSLKEHIKIHTGDEYKCKECDYKTVRKNENIAVFGKIFDILAEVLNKKSGDSSAEEEEEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-