Lyun000113.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5000385-5009671[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2.5 35 5.2 2.5 1 23 147 169 147 169 0.97
2 15 9.4e-05 0.0013 19.2 1.5 1 23 201 223 201 223 0.97
3 15 0.0001 0.0015 19.0 1.4 1 23 233 255 233 255 0.98
4 15 0.02 0.28 11.8 0.7 1 23 260 282 260 282 0.98
5 15 6.1e-05 0.00087 19.7 1.8 1 23 287 309 287 309 0.99
6 15 0.16 2.2 9.0 7.0 1 23 314 336 314 336 0.98
7 15 8.5e-05 0.0012 19.3 0.8 1 23 341 363 341 363 0.99
8 15 0.35 4.9 7.9 0.7 1 23 368 390 368 390 0.96
9 15 0.19 2.7 8.7 0.4 1 23 395 417 395 417 0.96
10 15 0.00032 0.0045 17.5 2.1 1 23 422 444 422 444 0.99
11 15 2e-05 0.00028 21.3 2.0 1 23 449 471 449 471 0.99
12 15 0.00016 0.0023 18.4 3.1 1 23 476 498 476 498 0.98
13 15 0.036 0.51 11.0 1.4 1 23 503 525 503 525 0.97
14 15 0.00069 0.0097 16.4 3.8 1 23 530 552 530 552 0.99
15 15 0.0033 0.047 14.3 2.4 1 23 557 579 557 579 0.97

Sequence Information

Coding Sequence
ATGAGCGGTGAGGATTGGTCGGACTACAGTAGTGATGACCCAGAATATGAAATTAGTGACCATTCGGAGATGAGTGATTCTGATGGGAGTTATTCGGATACAGATGATGACGAAGATATTCCAACTGTAagctttaataattggaatgttttAAGTGATCCTTTTGCCGATAATATACCTAGACCATTGCAAGATTTTTCTGCCGATTATGATTTTCACCCGGAAATTGACTTTCAAGAATATTATGCGAGTAAGGAACTGAAACCGGAGCCAGTAAATTACGAAGAATCGGTTAAACCCAAAGAAGAAAGTGATCTAGTAGAACCCATAGCTACACATGCTGCTCCGCAGCAACAAGATTTTTGTAATGActctaattttaaaacaattgaagaaaatgcTGTAATAGAAGTTTCAAAACTTACTAAAAGTGCTAAATACtcttgtaaggaatgtaactttacaaccGAGTTAGAATGTTCTATAAAAGAGCATACAAGGATTCACAGTGATGgatataatattgaagaatgtaaATTTAAGATGCCACAGATTTTATCTCTATCGTCACAGTTGAAATCTCCAAAAAGTGGGAATCAATAtgcttgtaatgaatgtaattacaccacatCGAACAAAAATTATCTAAGGAAACATGTGAAGATTCACAAAGGTGAAACAGATAGTTGCGAGAAATTtgtgtgtacaaaatgtgattataaaactatacagAAAAGTTACCTAatgcaacatatcaaaattcatactggtggcaaatataagtgtaaagaatgtgattataaaacggcatGGAAACgtgatctaatgcaacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtaattataaaactatacagAAAAGTTACCTAAAagcacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtaattataaaactgtacggaaacattgtataaagcaacatgtcaaaattcatactggtgaggaatataagtgtaaagaatgtgattataaaactatacggAAAGGAgacctaatgcaacatgtcaaaattcatacaggtgaggaatttaagtgtaaagaatgtgattataaaacggtatggaaaactgttctaatgcaacatgtcaaaattcatactggtgaggaatataagtgtaaagaatgtgattataaaacggtatggaaaggtgttctaatgcaacatgtcaaaattcatacaggtgaggaatataagtgtaaacagtgtgattataaaactatacggAAAAAAgacctaatgcaacatgtcaaaattcatacaggtgaggaatacaagtgtaaagagtgtgattataaaactatacggAAAAGTTacctaaaggaacacatcaaaattcatacaggtgaggaacataagtgtaaagagtgtgattataaaactatacggAAAAGTTACCTAAAagcacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaagtcatctaaTGGAACATGGCAatattcatacaggcgatgaatataagtgtaaagaatgtaattataaaactgtacggaaaagaGACTTAATgcatcatgtcaaaattcataatggtaacaaatataagtgtaaagaatgtgattttaaaactctacgaaaaagttatctaaaggaacatattaaaattcatactagTGACACATTGTAA
Protein Sequence
MSGEDWSDYSSDDPEYEISDHSEMSDSDGSYSDTDDDEDIPTVSFNNWNVLSDPFADNIPRPLQDFSADYDFHPEIDFQEYYASKELKPEPVNYEESVKPKEESDLVEPIATHAAPQQQDFCNDSNFKTIEENAVIEVSKLTKSAKYSCKECNFTTELECSIKEHTRIHSDGYNIEECKFKMPQILSLSSQLKSPKSGNQYACNECNYTTSNKNYLRKHVKIHKGETDSCEKFVCTKCDYKTIQKSYLMQHIKIHTGGKYKCKECDYKTAWKRDLMQHVKIHTGDEYKCKECNYKTIQKSYLKAHVKIHTGDEYKCKECNYKTVRKHCIKQHVKIHTGEEYKCKECDYKTIRKGDLMQHVKIHTGEEFKCKECDYKTVWKTVLMQHVKIHTGEEYKCKECDYKTVWKGVLMQHVKIHTGEEYKCKQCDYKTIRKKDLMQHVKIHTGEEYKCKECDYKTIRKSYLKEHIKIHTGEEHKCKECDYKTIRKSYLKAHVKIHTGDEYKCKECDYKTIWKSHLMEHGNIHTGDEYKCKECNYKTVRKRDLMHHVKIHNGNKYKCKECDFKTLRKSYLKEHIKIHTSDTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-