Lyun012652.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001977.1:762610-764999[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.026 0.36 11.5 4.1 1 23 157 179 157 179 0.99
2 17 9.3e-05 0.0013 19.2 1.9 1 23 184 206 184 206 0.99
3 17 0.00047 0.0067 16.9 1.9 1 23 211 233 211 233 0.99
4 17 0.0036 0.051 14.2 1.1 1 23 238 260 238 260 0.99
5 17 0.066 0.93 10.2 1.3 1 23 265 287 265 287 0.98
6 17 6.2e-05 0.00088 19.7 1.0 1 23 292 314 292 314 0.99
7 17 0.006 0.085 13.5 1.7 1 23 319 341 319 341 0.99
8 17 0.025 0.35 11.5 0.4 1 23 346 368 346 368 0.98
9 17 3.3e-05 0.00047 20.6 0.8 1 23 373 395 373 395 0.99
10 17 0.018 0.26 11.9 1.2 1 23 400 422 400 422 0.98
11 17 0.0067 0.095 13.3 1.0 1 23 427 449 427 449 0.99
12 17 0.072 1 10.1 0.4 1 23 454 476 454 476 0.98
13 17 5e-05 0.00071 20.0 1.1 1 23 481 503 481 503 0.99
14 17 0.0014 0.02 15.4 0.7 1 23 508 530 508 530 0.99
15 17 0.015 0.22 12.2 3.1 1 23 562 584 562 584 0.99
16 17 0.072 1 10.1 2.0 1 23 589 611 589 611 0.98
17 17 0.39 5.5 7.8 2.8 1 23 616 639 616 639 0.96

Sequence Information

Coding Sequence
ATGAATATTAATTCTATTGAAAGTTGcgcaataaaatctgaagtgattttaacagaaacgtttTTGTTTGGTGCAGAATACGGAGATTGCGAAAAATCGtttaaatgtaaggaagaaTATGTTCCTGTGGAGCACATGGATAAAAATGCTGCTACGATGTTACTCCACTCTTCTAATGAATGTAACTTTGCAAGGAAAAAAGATTTTGGAATAGAAGATTTGCACattactaaaaatgttcaatCTTTTTCTAAGGAAAGTATCTGTACAACCCAGTCAGAATGTTGTACAAAAGAACATTTGAAGAGTCACAGCGGAGTTGATgcatgtaattttaaaacaccgCAGATATTCTCTTCCACACCACTGctgaaaaatggcgacaaataTACTTTTACCAAATGTAATTATACAACATTAACCAAAAATGATCTAAggcaaaattcaaaaattcataaaggtgcTGAATATACTTGTGAGAACTGTAACTATAAAACATGTTTGAAACGTTCTTTCATAGCACACATCAAAACTCATACAATTggtaaatataagtgtaaagaatgtgattataaagtaGCATCGAAATACAGTCTAAATGAACATTACAaaactcatacaggtgatgaatataagtgcaatgaatgtgattataaaacaatacgaaaaagacgtctaaaggaacacatcaaaattcatacaggcgacgtatataagtgtgaaaaatgtgattttaaaacagtatggaaaagtaacCTGAAGgtacatctcaaaattcatacaggcaatGTATATAAGTGcgaagaatgtgactataaaacagtatgtGAAAGTAGTCTAaatgaacatgtcaaaattcatacaggcgacaTATATAAGTGTGAAAAATGTGATTTTGAAACAGTAAGGAAATCTAGTCTAagggaacatatcaaaattcatacaggcgacaTGTATAAGTGTgaaaaatgtaactttaaaacagTGTGGAGAAGTAACctaaagcaacatatcaaaattcatacaggcaacacatataagtgtgaagaatgtgagtTTAAAACGGTGTGGAGAAGTAACTTAAAggtacatgtcaaaattcatacaggcaatgtatataagtgtgaagaatgtgactataaaacagtacgtCAAAGtagtctaaaagaacatgtcaaaattcatacaggcgaccaatataagtgtaaagaatgtgattataaaacaatatggaaatacagtctaaaggaacatgtcaaaattcatacaagcaacacatataagtgtgaaaaatgcaattataaaacagtatggaaaagtagtctaaaggaacatatccaaattcatacaggcgacaTATATATATgtgaaaaatgtgattataaaacagtatggagaAATAGCCTAAaagaacatatcaaaattcatacaggcaaCAAATATAAGTGccaagaatgtgactataaaacagtacgtcaaagtagtctaaaggaacatgtcaaaattcatacagtttccaaatataagtgtaatgaatgtgattataaaacagtatgggaaagtaatctaaagagacatgtcaaaattcatacaagcaAACAATATgggtgtaaagaatgtgattataaaacattgtggaaacatcatctaaaaaaccatgtgagaattcatacaggtaaccaatataagtgtaaagaatgtgattataaaactgtgttaAAACATCGCCTAAAGGACCAtgtgagaattcatacaggtaaccAATATAAATGTgacaaatgtgattataaaacggtgtggaaaaatcttctaaagcaacatgttaaaaaacatacaggcaatgagtataagtgtaatgattgtgattataaaaccctgtggaaaaataatctaaacaaaCATGTAAAAACAATTCACATAGTTggcaaacgtaaataa
Protein Sequence
MNINSIESCAIKSEVILTETFLFGAEYGDCEKSFKCKEEYVPVEHMDKNAATMLLHSSNECNFARKKDFGIEDLHITKNVQSFSKESICTTQSECCTKEHLKSHSGVDACNFKTPQIFSSTPLLKNGDKYTFTKCNYTTLTKNDLRQNSKIHKGAEYTCENCNYKTCLKRSFIAHIKTHTIGKYKCKECDYKVASKYSLNEHYKTHTGDEYKCNECDYKTIRKRRLKEHIKIHTGDVYKCEKCDFKTVWKSNLKVHLKIHTGNVYKCEECDYKTVCESSLNEHVKIHTGDIYKCEKCDFETVRKSSLREHIKIHTGDMYKCEKCNFKTVWRSNLKQHIKIHTGNTYKCEECEFKTVWRSNLKVHVKIHTGNVYKCEECDYKTVRQSSLKEHVKIHTGDQYKCKECDYKTIWKYSLKEHVKIHTSNTYKCEKCNYKTVWKSSLKEHIQIHTGDIYICEKCDYKTVWRNSLKEHIKIHTGNKYKCQECDYKTVRQSSLKEHVKIHTVSKYKCNECDYKTVWESNLKRHVKIHTSKQYGCKECDYKTLWKHHLKNHVRIHTGNQYKCKECDYKTVLKHRLKDHVRIHTGNQYKCDKCDYKTVWKNLLKQHVKKHTGNEYKCNDCDYKTLWKNNLNKHVKTIHIVGKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-