Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002419.1:3381197-3389956[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2e-05 0.00017 21.9 1.7 1 23 219 241 219 241 0.98

2 9 1.2e-07 1.7e-06 28.3 1.6 3 23 249 269 247 269 0.98

3 9 0.00091 0.013 16.0 0.4 1 23 275 297 275 297 0.98

4 9 7.1e-06 0.0001 22.7 1.1 1 23 303 325 303 325 0.99

5 9 8.9e-05 0.0013 19.2 1.7 2 23 441 462 440 462 0.96

6 9 1.1e-08 1.6e-07 31.5 1.6 1 23 468 490 468 490 0.98

7 9 0.0026 0.037 14.6 0.6 3 23 498 518 496 518 0.97

8 9 0.00038 0.0054 17.2 0.9 1 23 524 546 524 546 0.99

9 9 0.077 1.1 10.0 0.8 1 23 552 576 552 576 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2e-05	0.00017	21.9	1.7	1	23	219	241	219	241	0.98
2	9	1.2e-07	1.7e-06	28.3	1.6	3	23	249	269	247	269	0.98
3	9	0.00091	0.013	16.0	0.4	1	23	275	297	275	297	0.98
4	9	7.1e-06	0.0001	22.7	1.1	1	23	303	325	303	325	0.99
5	9	8.9e-05	0.0013	19.2	1.7	2	23	441	462	440	462	0.96
6	9	1.1e-08	1.6e-07	31.5	1.6	1	23	468	490	468	490	0.98
7	9	0.0026	0.037	14.6	0.6	3	23	498	518	496	518	0.97
8	9	0.00038	0.0054	17.2	0.9	1	23	524	546	524	546	0.99
9	9	0.077	1.1	10.0	0.8	1	23	552	576	552	576	0.95

Sequence Information

Coding Sequence: atgtatcagatgaaaattaaagaaactgGTGCACCTTATGTCTTGTACAAAGATGGTATCGATCGCACGCAAAGCCAGTGGGGCATTCACGACAATTACGGCGGCCCCCAACAAACATCATCCGGTGCCGCGAGCCCGCAACAGACGTGCGGTCCCACCGTGCCGCTCGGTGTAGAAGCCGATTCGGTGCCGCCGCGCGATCAGAGCCTGCCGTCGCCGGCTCCTTCGCCGTATCCCGCCGCTCAATCGAAATCGCGAGAAGACGATATACCGCCAGAACCTCCGACGATGGACTTGGAGCAGAGGCCAGCGTCGTGTTTCCCCGGAGATCTTCAGCAACCGCCGCCGCCGCCATCCCAGCAGCAGCAACAACAGCAGCAGTCGGCGTATCATCAATATTCTCGCGTGCCGCCACCTGCTGCTCCACCGCCCGTGCCCCCTCACATGTTGGGGGCCGGCAGCTTTTCGGCGCTGCACTATCTAAAACAGCCAGGCGTTATGCTTTCGTCTCTGGGACAAGATAACGGAGCCGTAGATCAATACGTCAGCAGTATGCAAGATTTACGCTCGGCGTCGCTGCCGGACGTCATACAACAGCAGCAACAGCACCAAATGAAGTCGAACAAGAACGCGTTGGGCGGCGAGCTACGTCTCTTCAAGTGCCTGACTTGCGGGAAggatttcaaacaaaaatcgACCCTTCTGCAACACGAACGTATTCATACCGACAGCAGACCCTACGGTTGTCCCGAATGCGGAAAACGTTTTAGGCAACAATCTCATCTGACCCAACATCTACGCATCCACGCCAACGAGAAGCCGTACGCTTGTGTGTATTGCGAGAGAACTTTTCGGCAGAGGGCGATCCTCAACCAGCATCTGCGCATCCACTCCGGTGAGAAGCCATATGAATGCCCAGAGTGCGGGAAGCATTTCCGCCAGAAGGCCATCCTCAATCAGCACGTCCGCACACACCAAGACGTAAGTCCCCATTTGGTGTTCAAAAATGGCCTGAATCCTACTTTGTGGCCTCAAGACGTGCCGTTTCCTCCGGACGAAGGGAAGGAAGAGGTCGCGTCGACTTACGGCGATGGGGACGCTAGTGCGGTTCAACAAGATAGATCGAGTTGTTTCTCACCGGGTAGTGTGGCAGGTAATTTACAATATCCGGCGTATTTTAAGGACGCAAAAGGCATAAATCATTCGGTGTTCGGCGCGACAGCTAATTTCGGAGCTTTGCAATATCTAAAACAAAGTCAAGCGGGTAAATTGCCGGACGTTATCCAGCATGGTAGATCGGCGGGGATGCCCCTATACGTGCGATGTCCCATTTGTCAAAAGGAATTTAAGCAGAAGTCGACGCTACTGCAGCACGGCTGCATTCACATCGAATCCAGACCGTATCCCTGTCCTGAGTGTGGCAAAAGGTTTAGGCAGCAGTCTCATTTAACTCAGCACTTGCGAATTCACACGAACGAAAAGCCGTACGGTTGTGTGTACTGCGGTCGTAACTTTCGTCAACGAACGATTCTAAATCAGCACTTGCGTATTCACACAGGAGAAAAACCTTACAAGTGTGGGCAGTGTGGCAAAGACTTTAGGCAAAAGGCGATACTGGACCAACATACACGCACTCATCAAGGCGACAGACCGTTTTGTTGCCCGATGCCAAACTGCAGAAGACGATTTGCCACAGAGCCTGAAGTCAAAAAACACATCGATAATCACATGAATCCTCATGCTACCAAGACCCGTAGAAATTCTACGAGTTcagaaaatggaaaacaaaatggGTTGTTACCGAGGGGTCTGACTCCAACAACCGTGGTGAAGCCCGAACTATATTTTCCACAATGTTACGCACCCAGTTTTAATCCGCCGAGTGGTGTGGCTCAGTTTCAAGGTCCAACTTCAGATTATAAATCGTCTAACGGTTTGCCGGCTCAGTGA
Protein Sequence: MYQMKIKETGAPYVLYKDGIDRTQSQWGIHDNYGGPQQTSSGAASPQQTCGPTVPLGVEADSVPPRDQSLPSPAPSPYPAAQSKSREDDIPPEPPTMDLEQRPASCFPGDLQQPPPPPSQQQQQQQQSAYHQYSRVPPPAAPPPVPPHMLGAGSFSALHYLKQPGVMLSSLGQDNGAVDQYVSSMQDLRSASLPDVIQQQQQHQMKSNKNALGGELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGLNPTLWPQDVPFPPDEGKEEVASTYGDGDASAVQQDRSSCFSPGSVAGNLQYPAYFKDAKGINHSVFGATANFGALQYLKQSQAGKLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHATKTRRNSTSSENGKQNGLLPRGLTPTTVVKPELYFPQCYAPSFNPPSGVAQFQGPTSDYKSSNGLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330021;
90% Identity: iTF_00153828;
80% Identity: -