Lyun007289.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001223.1:8702066-8703862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.44 6.2 7.6 0.1 2 21 67 86 66 87 0.93 2 17 0.0091 0.13 12.9 2.4 1 23 150 172 150 172 0.98 3 17 0.0032 0.045 14.3 1.0 1 23 177 199 177 199 0.98 4 17 3.4e-05 0.00048 20.5 0.6 1 23 204 226 204 226 0.98 5 17 0.0046 0.065 13.8 2.2 1 23 231 253 231 253 0.98 6 17 0.16 2.2 9.0 1.7 1 23 258 280 258 280 0.98 7 17 0.00013 0.0018 18.7 1.0 1 23 285 307 285 307 0.97 8 17 4.2e-05 0.00059 20.3 0.6 1 23 312 334 312 334 0.98 9 17 0.005 0.07 13.7 2.0 1 23 339 361 339 361 0.98 10 17 3.4 48 4.8 1.7 1 23 366 388 366 388 0.90 11 17 5.7e-05 0.00081 19.8 1.9 1 23 393 415 393 415 0.99 12 17 0.0013 0.018 15.6 0.2 1 23 420 442 420 442 0.97 13 17 5.2 73 4.2 2.1 1 23 447 469 447 469 0.89 14 17 0.011 0.15 12.7 0.5 1 23 474 496 474 496 0.98 15 17 0.0004 0.0057 17.2 0.7 1 23 501 523 501 523 0.99 16 17 0.73 10 6.9 2.2 1 23 528 550 528 550 0.96 17 17 0.002 0.029 15.0 2.3 1 23 555 577 555 577 0.99
Sequence Information
- Coding Sequence
- atgGATGTCGATTctattgaaagttgtgcaaTCAAATCAGAAGTAATTTTAACGGAAACGTTTTGTGGAGAATATGGAGGTTATGGGGATGAACAACCAAAAACAGAGCCGTTAGACTAccaagaatcttttaaatgtaaggaagaagATATTTCTGTAGAGCAAGCGGGCGTGCATGCTGTTCCGATGGAACAGTTATCTTGTAATGAGTGTGACTTTATGACAATGGAAAAAGACTCTCTGATAGAACACttgaaaatcgctaaaaatattcaatattctTGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTCTGTAGAAAAGCATTTCGGAGTTCATGAAGGTgtcgataaaaaatatattattgacggcagtatttttcaaacaacacaGAATTTCCGTTTAACACCGCAGTACAAAACTTCAAAAGGTGgtgacaaatatatttgtaatcaatgtaattataccacattAACCAAGAACTCTCTAAGAAGACATGTTAAAACCCATAAAGGagctgaatataagtgtaaagaatgtgattacaaaacagtgtggcaaagtgATCTACggaaacatgaaaaaattcatacaggtgttaaatatatgtgtaaagaatgtggttataaaacgGCAAGGAAAAgtagtttaaaggaacatgtcaacattcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcaaaaacgATATATAAAGCAACATGTGAAAatccatacaggtgacaaatatgagtgtcaagaatgtgattataaaaccgtGTGGAAACATAAACTAAAGgaccatgtcaaaattcatacaggtgatgaatatgattgtaaagaatgtgattataaaacagtgcgaaaagatagtctgaagcaacatgtcaaaattcatacaggtgttaaatatgagtgtaaagaatgtgattataaaacggcaaggaaaagtagtctaaaggaacatgtcaacattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcaaaaacaatatataaagcAACATGTGAAAatccatacaggtgacaaatatgagtgtcaagaatgtggttataaaaccttgtggaaaaatcaactaaaggaccatgtcaaaattcatacaggcgacgaatataagtgtaaagaatgtgattataaaacagtgcgaaaagatactctgaagcaacatgtcaaaattcatataggtgacaaatatgagtgtaaagaatgtgattataaaacagcaaagataagtaatctaaaggaacatgtagaaattcatacaggttataaacatgagtgtaaagaatgtggttataaaaccttgtggaaaaatcaactaaaggaccatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtgGTTTAAAGAaccatgcaaaaattcatataggtgttaaatataagtgtaaagaatgtgattataaaacagtaaagataagtagtctaaaggcacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgtggcagcGTTGTATAGTGagacacatcaaaattcatacaggtaatgaatataagtgcaaagaatgcgactataaaacagtgcaaaaacgATATATGAaccaacatgtaaaaattcatacagctgattga
- Protein Sequence
- MDVDSIESCAIKSEVILTETFCGEYGGYGDEQPKTEPLDYQESFKCKEEDISVEQAGVHAVPMEQLSCNECDFMTMEKDSLIEHLKIAKNIQYSCKECNFTTQLQCSVEKHFGVHEGVDKKYIIDGSIFQTTQNFRLTPQYKTSKGGDKYICNQCNYTTLTKNSLRRHVKTHKGAEYKCKECDYKTVWQSDLRKHEKIHTGVKYMCKECGYKTARKSSLKEHVNIHTGDEYKCKECDYKTVQKRYIKQHVKIHTGDKYECQECDYKTVWKHKLKDHVKIHTGDEYDCKECDYKTVRKDSLKQHVKIHTGVKYECKECDYKTARKSSLKEHVNIHTGDEYKCKECDYKTVQKQYIKQHVKIHTGDKYECQECGYKTLWKNQLKDHVKIHTGDEYKCKECDYKTVRKDTLKQHVKIHIGDKYECKECDYKTAKISNLKEHVEIHTGYKHECKECGYKTLWKNQLKDHVKIHTGDEYKCKECDYKTVWQSGLKNHAKIHIGVKYKCKECDYKTVKISSLKAHVKIHTGDEYKCKECDYKTVWQRCIVRHIKIHTGNEYKCKECDYKTVQKRYMNQHVKIHTAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -