Lyun014700.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:5222252-5224528[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.021 0.3 11.8 1.7 1 23 148 170 148 170 0.95
2 21 0.032 0.45 11.2 2.3 1 23 175 197 175 197 0.98
3 21 0.0087 0.12 13.0 1.9 1 23 202 224 202 224 0.98
4 21 0.006 0.085 13.5 2.5 1 23 229 251 229 251 0.98
5 21 0.084 1.2 9.9 0.6 2 23 265 286 264 286 0.95
6 21 0.006 0.085 13.5 2.5 1 23 291 313 291 313 0.98
7 21 0.012 0.18 12.5 1.7 1 23 318 340 318 340 0.98
8 21 0.028 0.39 11.4 1.3 1 23 345 367 345 367 0.98
9 21 0.034 0.48 11.1 0.8 1 23 372 394 372 394 0.98
10 21 0.0057 0.081 13.5 1.2 1 23 399 421 399 421 0.98
11 21 0.017 0.23 12.1 0.9 1 23 426 448 426 448 0.97
12 21 0.0057 0.081 13.5 1.2 1 23 453 475 453 475 0.98
13 21 7e-05 0.001 19.5 1.1 1 23 480 502 480 502 0.99
14 21 0.2 2.8 8.7 3.9 1 23 507 529 507 529 0.97
15 21 0.023 0.32 11.7 0.8 1 23 534 556 534 556 0.98
16 21 0.0012 0.017 15.6 2.2 1 23 561 583 561 583 0.99
17 21 0.023 0.32 11.6 1.1 1 23 588 610 588 610 0.97
18 21 0.0076 0.11 13.1 4.8 1 23 615 637 615 637 0.99
19 21 0.011 0.15 12.7 1.8 1 19 642 660 642 664 0.91
20 21 0.44 6.3 7.6 0.2 1 23 669 691 669 691 0.96
21 21 0.0066 0.094 13.3 3.3 2 23 697 718 696 718 0.97

Sequence Information

Coding Sequence
ATGGATATTAATTTTACTGAAAGTTGTTCAATAAAATCcgaaattattttaacagaaacattttgtgAAAACTACGAAGATTGTGATAATGAAGAACTGAAAATGGAGCCAGTAGATTACAAAGAATTGTTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGACACATCTGCTGCCCCAATACAACAATGTTCTAGTAATGAGCGTAACTTTGCAATGGAAAAAAATTCCATGCAAGGACATTCAAAAACTAcagaaaatatacaatatttttgtgaGTACTGTGACTTTAGAACTCATTTGGaatgtttcataaaaaaacatttgaaaattcacaaGGAAGTAGTTGATACATATATTACTAAGGAATCTAATTTTAAGACGCCACAGATATTCTCTTTAGCACCACATGTAAAAACGTCTAGAAGTGAtgaatacatttgtaatgaatgtaattttaagacttTAAACAAAACTTCTCTAAGGAGACATATGACAATTCATACATacgaggaatataagtgtaaaaaatgtgattataaaacattgcagAAATACAGTCTaatggaacatgtcaaaattcatacaggggagagatataagtgtaaagaatgtgattataaaacattgcggAAATATAGTCTAacggaacatgttaaaattcatacaggtgagaaatataagtgtaaagaatgtgattataaaacattgcggAAATATAGTTTAAtgcaacatctcaaaattcatacaggaacatgtcaaaattcattacAGGTGAGAAATAtaagttgtaaagaatgtgattataaaacattgcggAAATATAGTCTaatggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacattgcggAAATATAGTTTAAtgcaacatctcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacattgcggAAATATAGTCTAATGGAACATGTCaagattcatacaggtgagaaatataagtgtaaagaatgtgattatgaaacagtgtggaaatataatctaaaggaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtgtggagaAGTAGTCTAAAGGAGCATGGCAAAATTCattctggtgatgaatataagtgtaaagagtgtgattataaaacagtgtggaaatataatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaacattgcagAAATATAGTCTaatggaacatgtcaaaatacatacaggtcaggaatataagtgcaaagaatgtgattataaaacagtgtggaaatataatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgcggaaaagtggtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacattgcagAAATGTagtctaatgcaacatgtcaaaattcatacaggtgaggaatataaatgtaaagaatgtaattataaaactgtgtggaaaagTGGTCTAAAGGagcatgttaaaattcatacaggtgaggaatataagtgtaaggaatgtgattataaaacaatgcgGAAACGTACTCTACaggaacacgtcaaaattcatacaggagatgaatataagtgtatagaatgtgattataaaacaatgagGAAACGTAATCTacaggaacatgtcaaaattcatgcaggcgtggaatataagtgtaaagaatgtgattataaaacaatgcgGAAACGTTGTCTAcaggaacatctcaaaattcatacaggcgaggaatataggtgtaaagaatgtgattataaaacatcacaaAAATCGAGGCTAAAGGAACATGACAATATTCATAAAGGTGACAAATATacgtgtaacgaatgtgattatgaaactgTGTGGAAAGGTAGGCTAaatgaacatgtcaaaattcatacaggtgagaaacttaagtgtaacaaatgtgattataaaacagtgtggaaacataATCTAAAGAAACACATCAGAATTCATTCAGGTTAG
Protein Sequence
MDINFTESCSIKSEIILTETFCENYEDCDNEELKMEPVDYKELFKCKEEDDPAEHMDTSAAPIQQCSSNERNFAMEKNSMQGHSKTTENIQYFCEYCDFRTHLECFIKKHLKIHKEVVDTYITKESNFKTPQIFSLAPHVKTSRSDEYICNECNFKTLNKTSLRRHMTIHTYEEYKCKKCDYKTLQKYSLMEHVKIHTGERYKCKECDYKTLRKYSLTEHVKIHTGEKYKCKECDYKTLRKYSLMQHLKIHTGTCQNSLQVRNISCKECDYKTLRKYSLMEHVKIHTGDEYKCKECDYKTLRKYSLMQHLKIHTGEEYKCKECDYKTLRKYSLMEHVKIHTGEKYKCKECDYETVWKYNLKEHFKIHTGEEYKCKECDYKTVWRSSLKEHGKIHSGDEYKCKECDYKTVWKYNLKEHVKIHTGDEYKCEECDYKTLQKYSLMEHVKIHTGQEYKCKECDYKTVWKYNLKEHVKIHTGDEYKCKECDYKTVRKSGLKEHVKIHTGEEYKCKECDYKTLQKCSLMQHVKIHTGEEYKCKECNYKTVWKSGLKEHVKIHTGEEYKCKECDYKTMRKRTLQEHVKIHTGDEYKCIECDYKTMRKRNLQEHVKIHAGVEYKCKECDYKTMRKRCLQEHLKIHTGEEYRCKECDYKTSQKSRLKEHDNIHKGDKYTCNECDYETVWKGRLNEHVKIHTGEKLKCNKCDYKTVWKHNLKKHIRIHSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-