Lyun006980.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:38871-40654[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1 15 6.4 0.1 1 21 37 57 37 58 0.91
2 16 0.14 2 9.1 2.7 1 23 147 169 147 169 0.98
3 16 0.035 0.49 11.1 0.8 1 23 174 196 174 196 0.98
4 16 0.019 0.27 11.9 3.8 1 23 201 223 201 223 0.98
5 16 0.00016 0.0023 18.4 2.0 1 23 228 250 228 250 0.99
6 16 0.0013 0.018 15.6 1.2 1 23 255 277 255 277 0.98
7 16 0.019 0.27 11.9 3.8 1 23 282 304 282 304 0.98
8 16 0.00035 0.0049 17.4 2.1 1 23 309 331 309 331 0.98
9 16 0.0024 0.034 14.7 2.3 1 23 336 358 336 358 0.98
10 16 0.00038 0.0053 17.3 1.7 1 23 363 385 363 385 0.98
11 16 0.00098 0.014 15.9 0.9 1 21 390 410 390 411 0.95
12 16 0.00045 0.0063 17.0 2.6 1 23 417 439 417 439 0.98
13 16 0.019 0.27 11.9 3.8 1 23 444 466 444 466 0.98
14 16 0.00035 0.0049 17.4 2.1 1 23 471 493 471 493 0.98
15 16 0.0024 0.034 14.7 2.3 1 23 498 520 498 520 0.98
16 16 9.7e-05 0.0014 19.1 1.4 1 23 525 547 525 547 0.99

Sequence Information

Coding Sequence
atggatgttgattctattgaaaattgtgcaataaaatctgaagtggttttaacagaaacgttttcattttgtggACAAAACAGAGAGCATGCTGATCCAATgcaacaattttattgtaatgagtGTGGATTTATGACGCTGGAAAaagattctctaatagaacacttgaaaattacaaaaaatgttcaatattcttGTAAGGAGTGTAACTTTACAACACAGTTGCAATGTTCTATAAGAAAGCATTTCGCGATTCATAAAGGGGTGGATGATAAATCTATTATTGAAGAATGTAAATTTAAGACATTACAGATTTCCTGTTTAACACCTCAATGGAAAACTccaaaaaatgacaaatatatttgtaatgaatattaTCATACCACATTAATCAAAAGCTCACTAAGCCGAcgtgttaaaattcataaaagggctgaatataagtgtaataaatgtgattttacAACAGCATGGCAATGTGgactaaagaaacatgtcaaaattcatacaagtaacaaatatgagtgtaaagaatgtgattttaaaacagtatggaaaaataatctaaagaatCATAGAataattcatacaggtgatgaatataaatgtaaagagtgtgactataaaacaacgTGGCAAAGTTGTCTAaagaatcatgtcaaaattcatatgggtgaagaatataaatgtaaagaatgcgactataaaacggtacaaaaatattatctaaaggaacatgtgaaaattcatacaggtgatgaatataagtgtaaagaatgtgactatagaACATTGCGAAAAGATTCTCTAAAggcacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgactataaaacaacgTGGCAAAGTTGTCTAaagaatcatgtcaaaattcatacgggtgaagaatataaatgtaatgaatgtgactataaaacagtgcgaaaaaattctctaaaggaacatgttaaatATCActcaggtgatgaatataagtgtagagaatgtgattataaaacagtgcgaagaaattctctaaaggaacatgtcaaatatcatacaggtgatgaatataagtgtgaagaatgtgactataaaacagtgcgaaaaaattctctaaaggaacatgtcaaatatcatacaggtgatgaatataaatgtaaagaatgcgactataaaacggtacaaaaatattatctaaaggaacatgtgaaaatttatacaggtgatgaatataaatgtaaagagtgtgactataaaacagtgcgaaaaaattctctaaaggaacatgtcaaatatcatacaggtgatgaatataagtgtaaagaatgtgactataaaacaacgTGGCAAAGTTGTCTAaagaatcatgtcaaaattcatacgggtgaagaatataaatgtaatgaatgtgactataaaacagtgcgaaaaaattctctaaaggaacatgttaaatATCActcaggtgatgaatataagtgtagagaatgtgattataaaacagtgcgaagaaattctctaaaggaacatgtcaaatatcatacaggtgatgaatataagtgtgaagaatgtgactataaaacggtgcgaaaaaattctctaaagcaacatgtcaaaattcatactgtgTAA
Protein Sequence
MDVDSIENCAIKSEVVLTETFSFCGQNREHADPMQQFYCNECGFMTLEKDSLIEHLKITKNVQYSCKECNFTTQLQCSIRKHFAIHKGVDDKSIIEECKFKTLQISCLTPQWKTPKNDKYICNEYYHTTLIKSSLSRRVKIHKRAEYKCNKCDFTTAWQCGLKKHVKIHTSNKYECKECDFKTVWKNNLKNHRIIHTGDEYKCKECDYKTTWQSCLKNHVKIHMGEEYKCKECDYKTVQKYYLKEHVKIHTGDEYKCKECDYRTLRKDSLKAHVKIHTGEEYKCKECDYKTTWQSCLKNHVKIHTGEEYKCNECDYKTVRKNSLKEHVKYHSGDEYKCRECDYKTVRRNSLKEHVKYHTGDEYKCEECDYKTVRKNSLKEHVKYHTGDEYKCKECDYKTVQKYYLKEHVKIYTGDEYKCKECDYKTVRKNSLKEHVKYHTGDEYKCKECDYKTTWQSCLKNHVKIHTGEEYKCNECDYKTVRKNSLKEHVKYHSGDEYKCRECDYKTVRRNSLKEHVKYHTGDEYKCEECDYKTVRKNSLKQHVKIHTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-