Lyun007443.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001223.1:12926158-12927537[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 0.22 12.2 0.6 1 23 64 86 64 86 0.98 2 14 0.014 0.2 12.3 1.5 1 23 91 113 91 113 0.99 3 14 7.9e-05 0.0011 19.4 1.0 1 23 118 140 118 140 0.99 4 14 0.00078 0.011 16.3 0.5 1 23 145 167 145 167 0.99 5 14 0.0024 0.034 14.7 1.1 1 23 172 194 172 194 0.98 6 14 0.00075 0.011 16.3 1.4 1 23 199 221 199 221 0.99 7 14 0.03 0.42 11.3 0.9 1 23 226 248 226 248 0.98 8 14 7e-05 0.00099 19.6 0.8 1 23 253 275 253 275 0.99 9 14 0.00078 0.011 16.3 0.5 1 23 280 302 280 302 0.99 10 14 0.0024 0.034 14.7 1.1 1 23 307 329 307 329 0.98 11 14 0.00075 0.011 16.3 1.4 1 23 334 356 334 356 0.99 12 14 0.03 0.42 11.3 0.9 1 23 361 383 361 383 0.98 13 14 0.00013 0.0019 18.7 0.8 1 23 388 410 388 410 0.99 14 14 0.0025 0.035 14.7 0.8 1 23 415 437 415 437 0.99
Sequence Information
- Coding Sequence
- atggATGTGGAATGTAATGAAAGTTGTTCAATAAAATCGGAAGTGgttgtaaatgaaacattttcctttagtggaaaatatgaagattatgAGAGTGAAGAATTGAAAGCAGAACCTGTAGATTTTGAAGCAGTTTCTAAGTGGGAAAGAGATATTCATATGAAGCATGCCAGTAGTTCTAAATGcgaatatatttgtaatgaatgtaattataaaacacagtggaAATCGAATCTAGcgaaacatgtaaaaattcatactgctgatgaatataagtgtaaggaatgtgacttcAAAACATCATGGAAGCAGAGTTTAgagacacatttaaaaattcatactgctgatgaatataagtgtaaggaatgtgactataaatcagtaaacaaaaatctatttaacgcacacatcagaatccatactggcgagaaatataaatgtaatgaatgtgactataaaacagtgtggaaagttcaacttaaagcacacatcagaagccatactggtgatgaatataaatgtattgaatgtgactataaaacagtgaaaaaatataaacttaaagcACATAttagaatccatactggtgatgaatataaatgtaaggaatgtgactataaaacagtgtggaaatatCAACTTAAAGTACACATGAAAATCCattctggtgatgaatataagtgtaaggaatgtgacttcaaaacaccatggaagcagaGTTTAgagacacatttaaaaattcatactggtgatgaatataaatgtaatgaatgtgactataaatcagtaaacaaaaatctattcaacgcacacatcagaatccatactggcgagaaatataaatgtaatgaatgtgactataaaacagtgtggaaagttcaacttaaagcacacatcagaagccatactggtgatgaatataaatgtattgaatgtgactataaaacagtgaaaaaatataaacttaaagcACATAttagaatccatactggtgatgaatataaatgtaaggaatgtgactataaaacagtgtggaaatatCAACTTAAAGTACACATGAAAATCCattctggtgatgaatataagtgtaaggaatgtgacttcaaaacaccatggaagcagaGTTTAgagacacatttaaaaattcatgctggtgatgaatataaatgtaatgaatgtgactataaaacagtgataaaatataaacttcGAGCACACAttagaatccatactggtgatgaatataaatgtaaggaatgtgactataaagcAGTGTGGAAATATCAACTTAAAGTACACAtgaaaatccatactggtgattaA
- Protein Sequence
- MDVECNESCSIKSEVVVNETFSFSGKYEDYESEELKAEPVDFEAVSKWERDIHMKHASSSKCEYICNECNYKTQWKSNLAKHVKIHTADEYKCKECDFKTSWKQSLETHLKIHTADEYKCKECDYKSVNKNLFNAHIRIHTGEKYKCNECDYKTVWKVQLKAHIRSHTGDEYKCIECDYKTVKKYKLKAHIRIHTGDEYKCKECDYKTVWKYQLKVHMKIHSGDEYKCKECDFKTPWKQSLETHLKIHTGDEYKCNECDYKSVNKNLFNAHIRIHTGEKYKCNECDYKTVWKVQLKAHIRSHTGDEYKCIECDYKTVKKYKLKAHIRIHTGDEYKCKECDYKTVWKYQLKVHMKIHSGDEYKCKECDFKTPWKQSLETHLKIHAGDEYKCNECDYKTVIKYKLRAHIRIHTGDEYKCKECDYKAVWKYQLKVHMKIHTGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -