Lyun007439.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001223.1:12892307-12893757[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 0.2 12.3 0.9 1 23 63 85 63 85 0.98 2 13 0.0029 0.042 14.4 1.1 1 23 90 112 90 112 0.98 3 13 5.8e-06 8.2e-05 23.0 1.3 1 23 117 139 117 139 0.99 4 13 0.00094 0.013 16.0 1.3 1 23 144 166 144 166 0.99 5 13 0.00016 0.0023 18.4 4.2 1 23 198 220 198 220 0.99 6 13 0.0088 0.12 12.9 1.1 1 23 225 247 225 247 0.99 7 13 6.2e-05 0.00088 19.7 0.8 1 23 252 274 252 274 0.99 8 13 1.4e-05 0.0002 21.7 1.1 1 23 279 301 279 301 0.99 9 13 0.099 1.4 9.6 0.7 1 23 306 328 306 328 0.98 10 13 0.0027 0.038 14.6 1.6 1 23 333 355 333 355 0.99 11 13 1.5e-05 0.00021 21.7 1.8 1 23 360 382 360 382 0.99 12 13 0.006 0.085 13.5 0.4 1 23 387 409 387 409 0.98 13 13 0.00099 0.014 15.9 2.5 1 23 414 436 414 436 0.99
Sequence Information
- Coding Sequence
- atggatGTCGACTATAATCAAAGTTATCCGATAAAATTGGAAgttgtaaatgaaacattttccttTAATGGAAAATGTGAAGattacAAGAATGAAGAATTGAAAGCGGAGCTGGTAGATTTTGAAGTAGCTTCTAAGTGGGAAGGAGATATTCATATAGAGAACACCAATGGTTCCAAATgtgaatatatttgtaatgaatgtaattataaaacacagtggaAATCAAATTTGAtgaaacatgtgaaaattcatactgatgataGGTacaagtgtaatgaatgtgactacaaaacatcATGGAAGCAGAATcttaaggaacatgtaaaaattcatactggtgattggtataaatgtaatcaatgtgactataaaacagtgagaaaagaTCAACTTAAAATAcacatcagaatccatactggttatgaatataagtgtaaggattgTGACTACAAAACAATATGGAAGTATAATTTAAAGGATCATATAAAAATTCACACTAGTGATTACTATAAATGtattgaatgtgattacaaaacattgtggaagcaaaaattaaaggaacatgtaagaATTCATTCTGAtgatgagtataaatgtaatgaatgtgattataaaacagtgaggaaacatttatttaaaacacacaTTAGAATCCAtactgatgatgaatataaatgtaatgaatgtgactacaaaacaccatggaagcaaaattttaaggatcatataaaaattcataccggtgacgagtataaatgtaatgaatgtgactataagaCAGTGAGGACAGATCTATTTAAAGCAcacatcagaatccatactggtgaagaatataagtgtaaggaatgtgaatTTAAAACAGTAAGGAAAGATCAACTGAAAGCACACATCAggatccatactggtgatgaatataaatgtaaggaatgtgaatataaaacaccatggaagcagaGTTTACAactacatgtaaaaattcatactggtgatgtgtataaatgtaatgaatgcgaCTACAAAGCAGTGAGGAAAGATCGATTTAAAGCACACTTCAGAATCCATACTgttgatgaatataagtgtaaggaatgtaaatttaaaacagtaaGGAAAGATCAACTTAAAGCACACATCAggatccatactggtgatgaatataaatgtaatgaatgtgactacaaaacaccatggaaacagaatTTAAACGTACATGTAAAGATCCATACTGGTGAtcagtataaatgtaatgaatgtgactataaaacagtgcgaaaagatcgATTTAAAGCACACttcagaatccatactggtgatgagtataagaGTAAGGAATTtgactacaaaacaccgtcAAAAGAGACTTTAAAGAAGCATGTAACAATTCATACATAA
- Protein Sequence
- MDVDYNQSYPIKLEVVNETFSFNGKCEDYKNEELKAELVDFEVASKWEGDIHIENTNGSKCEYICNECNYKTQWKSNLMKHVKIHTDDRYKCNECDYKTSWKQNLKEHVKIHTGDWYKCNQCDYKTVRKDQLKIHIRIHTGYEYKCKDCDYKTIWKYNLKDHIKIHTSDYYKCIECDYKTLWKQKLKEHVRIHSDDEYKCNECDYKTVRKHLFKTHIRIHTDDEYKCNECDYKTPWKQNFKDHIKIHTGDEYKCNECDYKTVRTDLFKAHIRIHTGEEYKCKECEFKTVRKDQLKAHIRIHTGDEYKCKECEYKTPWKQSLQLHVKIHTGDVYKCNECDYKAVRKDRFKAHFRIHTVDEYKCKECKFKTVRKDQLKAHIRIHTGDEYKCNECDYKTPWKQNLNVHVKIHTGDQYKCNECDYKTVRKDRFKAHFRIHTGDEYKSKEFDYKTPSKETLKKHVTIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -