Lyun017256.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002352.1:3681299-3683893[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0082 0.12 13.0 0.1 1 21 68 88 68 89 0.95
2 20 0.00011 0.0015 19.0 1.5 1 23 166 188 166 188 0.99
3 20 0.0024 0.033 14.7 1.8 2 23 194 215 193 215 0.97
4 20 0.0012 0.017 15.7 1.9 1 23 220 242 220 242 0.98
5 20 0.00084 0.012 16.2 2.6 1 23 247 269 247 269 0.98
6 20 0.062 0.87 10.3 4.2 1 23 274 296 274 296 0.98
7 20 0.0019 0.027 15.0 0.2 1 23 301 323 301 323 0.99
8 20 5.4 76 4.2 0.3 1 17 328 344 328 345 0.92
9 20 0.00061 0.0086 16.6 2.3 1 23 382 404 382 404 0.99
10 20 0.037 0.52 11.0 0.6 2 23 410 431 409 431 0.96
11 20 0.014 0.2 12.3 3.8 1 23 436 458 436 458 0.99
12 20 0.0042 0.06 13.9 2.7 1 23 463 485 463 485 0.98
13 20 0.004 0.057 14.0 1.4 1 23 490 512 490 512 0.99
14 20 6.3 89 4.0 0.6 5 23 521 539 520 539 0.94
15 20 0.12 1.7 9.4 0.4 2 23 545 566 544 566 0.96
16 20 0.022 0.31 11.7 2.7 1 23 571 593 571 593 0.97
17 20 0.0078 0.11 13.1 0.9 1 23 598 620 598 620 0.98
18 20 0.0007 0.0099 16.4 2.2 1 23 625 647 625 647 0.99
19 20 0.045 0.64 10.7 0.7 1 23 652 674 652 674 0.98
20 20 0.00057 0.0081 16.7 3.4 1 23 679 701 679 701 0.99

Sequence Information

Coding Sequence
atgaacgtaaattgtaataaaagttatCCAATAAAATCCGAAATGATTCTAAAGGAAACATTTTCCTATTgtggaaaatatgaagATAATGGgaatgaagaattgaaaaaggaGCCAGTAGATTTTGAAGCATCTGTTAAGTGTGAGAATGAAAACAATCCCGTGGAGCACATCAATATACAGGATTCATCCATacaacaatatatttgtaatgaatgtaatttcaTTACAACAGACAAAGATTCTCTAAttgaacatttgaaaatttccaaCAACGTTCATTACTCTTGTAAGGtatgtaactttaaaacactGTTGGAGTGTTCAATAACAGAACATTTGAGGATTCATAACACTGTTGTTGTTGCTGGATATATTACTacaaaatattgtttcaagggACCACAAATCTTATCGGCACagttaaaaactaaaaaaggtgatgatgaatatatgtgtaagaaatgtgattataaatcacCATGGGaacatgaatataagtgtaatgaatgtgactataaaacaacgGGGAAAGGTAATTTAACAACGCATAGGaagattcatactggtgatgaaatgaaatgtaacgaatgtgactataaaacactgaagaaaggtaatttaaaaaggcatatgaaaattcatactggtaatgaacataagtgtaatgaatgtgactttaaagtAGTGAGGAAATATGATTTAGAtatgcatatgaaaattcatactggtaacgaacataaatgtaatgaatgtgagtttaaaacagtgaggaaataTGATTTAGAaatgcatatgaaaattcatacaggtaatgaatataagtgtaatgaatgtgaatATAGAACATTGCGGaaaggttgtttaaaaaatcatatgaaaCTTCATGCTGGTATGGactataagtgtaatgaatgcgattataaagcggtgataaaatatgatttagaAATGCATATGAATATTCATACAGGTAGTGAATATAAGTGCAATAGATGTGAGTATAAAACAATAGggaaaggtaatttaaaaatgtataggaagattcatactggtgatgaaatGAAGTGTAGTGAATGTGACTATACAACACCAGGGAAAGGTTGTTTAAAAAGCTATATGAATATTCATGCTGGtaaggaatataagtgtaatagATGTGACTATCAAACAATGAggaaaggtaatttaaaaacgCATCTGAAGATTCATACTGGCCTTGAAATGagatgtaatgaatgtgactataaaacactgGGGAAAGGTTGGCTAaaaaaacatatgaaaattcatactggcatggagtataagtgtaatgatTGTGATTACACAACACTGAAGAAAGGTTGTTTAAAAAgccatatgaaaattcatactggtaaggaatataagtgtaatgaatgtgactacaaaacactgGGGAGAGGTCATTTAAAAaggcatatgaaaattcatactggtaatgaatataagtgtaacaaaTGTGACTTTAAATCAGTGAAAAACGGAGTTTTAAAAAgccatatgaaaattcatagtggtaaggagaatatgtttaatagatgtgactataaaacaattaagaaaGGTAATATAAAAACACATAAGAAGATTCATACTGGTCATGAAAtgaagtgtaatgaatgtgactataaaacactgGGTAAAGGTTGGTTAAAACTccacatgaaaattcatacaggtaaggaatataagtgtaatgaatgtgactttaaaacactGATGGAAGGTCATTTAAAAaggcatatgaaaattcatactggtaatgaatataagtgtaatgaatgtgactataaaacactggggaaaggtaatttaaaaacgcatttgaaaattcatactggtaatgaatataagtgtaacaaatgtgactttaaaacagtgAAAAAAGGAGTTTTAAAAaggcatatgaaaattcatactggtatgaaatataagtgtaatgaatgtgactatactTCACTGGGGAAAggttatttaaaaatgcatttgaaaattcatactggtaatgagtataagtgtaacaaatgtgactttaaaacagtgaaaaaaggatttttaaaaaggcATATGAAAATACATACTGGtaagtaa
Protein Sequence
MNVNCNKSYPIKSEMILKETFSYCGKYEDNGNEELKKEPVDFEASVKCENENNPVEHINIQDSSIQQYICNECNFITTDKDSLIEHLKISNNVHYSCKVCNFKTLLECSITEHLRIHNTVVVAGYITTKYCFKGPQILSAQLKTKKGDDEYMCKKCDYKSPWEHEYKCNECDYKTTGKGNLTTHRKIHTGDEMKCNECDYKTLKKGNLKRHMKIHTGNEHKCNECDFKVVRKYDLDMHMKIHTGNEHKCNECEFKTVRKYDLEMHMKIHTGNEYKCNECEYRTLRKGCLKNHMKLHAGMDYKCNECDYKAVIKYDLEMHMNIHTGSEYKCNRCEYKTIGKGNLKMYRKIHTGDEMKCSECDYTTPGKGCLKSYMNIHAGKEYKCNRCDYQTMRKGNLKTHLKIHTGLEMRCNECDYKTLGKGWLKKHMKIHTGMEYKCNDCDYTTLKKGCLKSHMKIHTGKEYKCNECDYKTLGRGHLKRHMKIHTGNEYKCNKCDFKSVKNGVLKSHMKIHSGKENMFNRCDYKTIKKGNIKTHKKIHTGHEMKCNECDYKTLGKGWLKLHMKIHTGKEYKCNECDFKTLMEGHLKRHMKIHTGNEYKCNECDYKTLGKGNLKTHLKIHTGNEYKCNKCDFKTVKKGVLKRHMKIHTGMKYKCNECDYTSLGKGYLKMHLKIHTGNEYKCNKCDFKTVKKGFLKRHMKIHTGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-