Lyun006119.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
ythdf2
Assembly
GCA_013368075.1
Location
JABVZV010001045.1:431221-457091[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.076 1.1 10.0 0.8 1 23 76 98 76 98 0.98
2 18 0.0002 0.0028 18.1 3.2 1 23 130 152 130 152 0.98
3 18 0.0049 0.069 13.8 1.4 1 23 184 206 184 206 0.99
4 18 4.4 63 4.4 1.4 1 23 212 234 212 234 0.96
5 18 0.61 8.6 7.2 2.9 1 23 239 261 239 261 0.98
6 18 4.7e-05 0.00067 20.1 1.3 1 23 293 315 293 315 0.99
7 18 0.024 0.33 11.6 0.6 1 23 320 342 320 342 0.98
8 18 8.3e-05 0.0012 19.3 1.7 1 23 347 369 347 369 0.99
9 18 0.2 2.8 8.7 1.3 1 23 374 396 374 396 0.98
10 18 0.028 0.4 11.4 0.8 1 23 401 423 401 423 0.98
11 18 0.00023 0.0032 18.0 1.9 1 23 428 450 428 450 0.98
12 18 0.078 1.1 10.0 1.6 1 23 455 477 455 477 0.98
13 18 0.0011 0.016 15.8 3.0 1 23 482 504 482 504 0.99
14 18 4.2e-05 0.0006 20.2 1.5 1 23 509 531 509 531 0.99
15 18 0.0072 0.1 13.2 0.6 1 23 536 558 536 558 0.99
16 18 8.3e-05 0.0012 19.3 1.7 1 23 563 585 563 585 0.99
17 18 0.037 0.52 11.0 0.5 1 23 590 612 590 612 0.98
18 18 0.022 0.31 11.7 1.0 1 23 617 639 617 639 0.99

Sequence Information

Coding Sequence
ATGGATATCGACTCGTTAGAGTTTACTGAAAattGTGGGAGTAACGAACTGAAAACGGAGCCAGTAAATTACAAAGAATCGCTTAAacgtaaagaagaaaatgatctgGCAGAATCCATAGATATACATGCTGCTCCGATGCAACAAGATTTTTGTAATGACTCTAATTTTACGACAGTTGGTGAAACTTCACAAATACTTTTAAGAGTTactaaaaacgttaaatactcttgtaaggaatgtaactttacaacccAGTTGGAAGGTTCTATAAATAAGCATATGAGGATTCACAATGACAGATATAATgttgaagaatgtaattttaagattCCACAGATTTTCTCTCTATCACCACAGTTGAAAACTCCAAGAAGTGCAAatgaatatatttgtaatgaatgtaatcaCACCACATCGAACAAAGATTATCTAAGGAAACATTTAAAGATTCATAAAGGCACTTCATATAGTTGcgagaaatgtgattataatacacAGTGGAAACATCACTTCACAGCACATGCAAAAATTCattctggtaatgaatataagtgtaaagaatgtgattataaaacgataGTGAAAAGgtatctaatgcaacatgtcaaaattcatacagatgataaagaatataagtgtatagaatgtgattataaaacagtatggaaagaTTGTCtgaaggaacacatcaaaattcacacaggtgataaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggaacacgtcaaaattcatacaggtgatgaatataactgtatagaatgtgattataaaacagtatggaaaaattgtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaacaattcggaaaagtgatctaatgaaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattataaaacagtatggaaaagtggtctaaaggaacacgtcaaagttcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtacggaaaaatcaactaaaggaacacatcaaaattcataaaagtaatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatCGACTAAAGCTACACATCaagattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtctGGAAAAATCtactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaaagaatgtaattataaaacagtacggaaaagttatctaaaggaacacgtcaatgttcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaggTATTTAAtgcaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaataatgaaaagtcatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacgattCGAAAAAGTGATCTaatgaaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattataagacagtatggaaaagtggtctaaaggaacacatcaaagttcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaaaatcaactaaaggaacacatcaaaattcatacaggtaatgaatataagtgtaatgaatgtgattataaaactgtgtggaaaaatCTACTGAAGGCACACGTCaagattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaagctactaaaggaacacatcaaaattcatacagTCTCCAATGGCACTAAGGAGCAGTTAGGTGCTGGTGAAGGAGCAAGTGGTTCTGAAGATTTTGAATCATGGCGATCACAACAACAGAATTCGGCAACCCCAACTGCTTACAGTGCAACAGTTCCCATTTCAAGTGCCACAGATATTTACAATATGAGCACTGCAGGTTATTATGGCAGTGGTGGAACATATCCATATCAGGCTTACGGAGTGGGAGATGGAACTTGGTCCAATGGTACAGATGGCATGACTTTTCTAAGTGGTTATCCACACGAATCATATTCAATGGACGGAATGTTCGGCCACTCAACAACTTTCTCAACCCCAACGGCCTTTGGCCAACCATCCtcattcaattattttcatagTAATGGAGACTTTAGCACTTGGGGTAGTCAGTTAGGACAACGTAAATTTGATGACTACTACGGAGGTGACCCACAAAGCATGTACACTCAGGCTATGCCTGATTCAGCACTTAAGAGTGTCGAACAAGCTATGCAAAATTTAGATTTGAAAGGGTCAGTTAATGACGGTAAAGATTCAGTATCTCAACCTAAGAAAACAACAACATGGGCAAGTATTGCTGGTCAGCCTGCGAAGCCACAACTTACGTCACAAACTCAAGgattaaaaaagaaaggtcCAGGAATGCCACCAGGACCTATTATACCTGGAAAACATAACATAGATATTGGAACATGGGATACAAGTAAAAATACACCACCTCAACTTCCTATTATTACAAATACTGCTCCAAAATCATTAGCACCTGCATTACCTGTCCGTCCGGGATGGAATGGACCTCCTACAAATAGGCCACCTCCTGCAGCTCCAAGACCGGGCCCGCCGATGCAATCTTATCAAGCCCCACCTATGATACCTACACATCTTCCACCTCCAGTAAGTGTTCCCACAGGACCTCATGTGCAAGGATTAATGCCTCCAGGAGGACCCATGTCTGTTTTGGTTGCCCCACCCACCCCATCACATCCAGTTTTGGATGAATTACGCGGTAAAAATAACTACAATCCTTCTGATTATGATTTATCAGCACCAAATGCgcgtttctttgtaattaaatcgtATTCTGAGGACGATATTCATAGGAGCATCAAATATGAGATTTGGTGTAGTACTGAACATGGAAATAAACGTTTAGACCAAGCTTATCGTGAACGTGATGGTAATGGTCCAGTGTATTTATTCTTTTCAGTTAATGGTTCTGGACATTTTTGTGGAATGGCACAGATGATGTCATCAGTGGACTACAACTCTAATAGCTCTGTGTGGTCTCAAGATAAGTGGAAAGGACAGTTTAAGGTGCGCTGGGTATATGTTAAAGATGTGCCTAATGTACAATTACGTCATATTCGActggaaaataatgaaaataaacctGTAACAAATTCGAGGGACACGCAAGAAGTGCCACATGCTAAAGGACTACAAGTTTTGCGTATTATGCATTCTTATCGCCATTCTACATctatttttgatgattttgtgcATTATGAAAAAcgtcaagaagaagaagattgcCGTAAAACTACAGAAACATCTAATCATAGAGAAGGCCCTCGTGAACATAAAGAAAGGGTGGGTGTTCGTAACCAAGATCGTGAAAATGATAGAGAAAATCATCGTCCTGGGAGTCATCGCAATGTTGAACATCATCACCCTGTTCATCATAAGGAGCCCTTAAGAAAAAGAGAGAAGTTACAGAATCAAGTTTCAAAGTGGAAATACAAGGTGCCAGAAGAAAGAGCCAATTCTGAATCGGGCTGTACATAA
Protein Sequence
MDIDSLEFTENCGSNELKTEPVNYKESLKRKEENDLAESIDIHAAPMQQDFCNDSNFTTVGETSQILLRVTKNVKYSCKECNFTTQLEGSINKHMRIHNDRYNVEECNFKIPQIFSLSPQLKTPRSANEYICNECNHTTSNKDYLRKHLKIHKGTSYSCEKCDYNTQWKHHFTAHAKIHSGNEYKCKECDYKTIVKRYLMQHVKIHTDDKEYKCIECDYKTVWKDCLKEHIKIHTGDKYKCKECDYKTVWKNCLKEHVKIHTGDEYNCIECDYKTVWKNCLKEHIKIHTGDEYKCTECDYKTIRKSDLMKHVKIHTDDKYKCKECDYKTVWKSGLKEHVKVHTGDEYKCKECDYKTVRKNQLKEHIKIHKSNEYKCKECDYKTVWKNRLKLHIKIHTGDEYKCKECDYKTVWKNLLKEHIKIHTGNEYKCKECNYKTVRKSYLKEHVNVHTGDEYKCKECDYKTIWKRYLMQHLKIHTGDEYKCKECDYKTIMKSHLKEHVKIHTGDEYKCKECDYKTIRKSDLMKHVKIHTDDKYKCKECDYKTVWKSGLKEHIKVHTGDEYKCKECDYKTVRKNQLKEHIKIHTGNEYKCNECDYKTVWKNLLKAHVKIHTGDEYKCKECDYKTVWKKLLKEHIKIHTVSNGTKEQLGAGEGASGSEDFESWRSQQQNSATPTAYSATVPISSATDIYNMSTAGYYGSGGTYPYQAYGVGDGTWSNGTDGMTFLSGYPHESYSMDGMFGHSTTFSTPTAFGQPSSFNYFHSNGDFSTWGSQLGQRKFDDYYGGDPQSMYTQAMPDSALKSVEQAMQNLDLKGSVNDGKDSVSQPKKTTTWASIAGQPAKPQLTSQTQGLKKKGPGMPPGPIIPGKHNIDIGTWDTSKNTPPQLPIITNTAPKSLAPALPVRPGWNGPPTNRPPPAAPRPGPPMQSYQAPPMIPTHLPPPVSVPTGPHVQGLMPPGGPMSVLVAPPTPSHPVLDELRGKNNYNPSDYDLSAPNARFFVIKSYSEDDIHRSIKYEIWCSTEHGNKRLDQAYRERDGNGPVYLFFSVNGSGHFCGMAQMMSSVDYNSNSSVWSQDKWKGQFKVRWVYVKDVPNVQLRHIRLENNENKPVTNSRDTQEVPHAKGLQVLRIMHSYRHSTSIFDDFVHYEKRQEEEDCRKTTETSNHREGPREHKERVGVRNQDRENDRENHRPGSHRNVEHHHPVHHKEPLRKREKLQNQVSKWKYKVPEERANSESGCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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