Lyun003160.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000480.1:194893-197496[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1 15 6.4 0.9 1 23 148 170 148 170 0.95
2 25 0.11 1.6 9.5 1.4 1 23 175 197 175 197 0.98
3 25 0.12 1.8 9.3 0.9 1 23 202 224 202 224 0.98
4 25 0.0028 0.04 14.5 1.6 1 23 229 251 229 251 0.98
5 25 0.0005 0.0071 16.9 0.8 1 23 256 278 256 278 0.99
6 25 0.12 1.8 9.3 0.9 1 23 283 305 283 305 0.98
7 25 1.1 16 6.3 4.0 1 23 310 332 310 332 0.98
8 25 0.0013 0.019 15.5 2.9 1 23 337 359 337 359 0.98
9 25 0.025 0.35 11.5 1.1 1 23 364 386 364 386 0.98
10 25 0.057 0.81 10.4 2.5 1 23 405 427 405 427 0.98
11 25 0.4 5.7 7.7 2.6 1 23 432 454 432 454 0.98
12 25 0.00025 0.0036 17.8 4.3 1 23 461 483 461 483 0.99
13 25 1.3 18 6.1 1.7 1 23 488 510 488 510 0.98
14 25 0.00033 0.0046 17.4 1.2 1 23 515 537 515 537 0.98
15 25 1 14 6.5 1.6 1 23 542 564 542 564 0.95
16 25 0.01 0.14 12.8 4.1 1 23 569 591 569 591 0.98
17 25 0.0003 0.0042 17.6 1.5 1 23 596 618 596 618 0.98
18 25 0.00014 0.002 18.6 0.6 1 23 623 645 623 645 0.99
19 25 0.00053 0.0075 16.8 1.7 1 23 650 672 650 672 0.99
20 25 2.7 38 5.1 2.1 1 23 677 699 677 699 0.93
21 25 0.12 1.8 9.3 0.9 1 23 704 726 704 726 0.98
22 25 0.00076 0.011 16.3 1.8 1 23 731 753 731 753 0.98
23 25 0.025 0.35 11.5 1.1 1 23 758 780 758 780 0.98
24 25 0.015 0.21 12.3 3.5 1 23 785 807 785 807 0.98
25 25 0.25 3.5 8.4 2.4 1 23 812 834 812 834 0.98

Sequence Information

Coding Sequence
ATGGATATTAATTCTACCGAAAGTTGTACAATAAAAtctgaaattattttaagagaAACATTTTGTGGAAACTATGAAGattgtggTAATAAAGAACTGAAAACGGAGCCAGTAAATTACAAAGAATTAGTTAAGTGTAAGGAAGATGATCCTACAGAGCACATGGATATATCTGCTGCCCCAATACAACAGTGTTCTGGTAATGAGGATAACTTTACAACAATGGAAAAAGATTCTCCACTAGgacatttaaaaactacaaaaaatgttcaatatttttgtaagcaatgtaactttaaaactcATTTGGAATGTTTCataaaaaagcatttgaaaattcacaAGGAAGTAGATGATACCTATATTACTAAGGAATGTAATGGTAAGACACCACCGAGTTTCTCTTTAGCAACACATGTAAAACCGTCAAAATGTGAtgaatacatttgtaatgaatgtagtTTTAccatgttaaacaaaaattctctAAGCAGACATATGACAATCCATACAGgtaaagaatataagtgtaaaacatgtgattataaaacagtgtggaaacggAATTTAAAgggacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtgattttaaaacagtgtggaaacagaatttaaagggacatgttaaaattcatacaggtgagaaatataagtgtaaagagtgtgattacaaaacagtgcaGAAAAGAAGGCTGAacgaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgcaATTACAAAACAGTGGAGAAAAGTATGCTGAAtgcacatgtcaaaattcatacaggtgaggaatataaatgtaaagaatgtgattttaaaacagtgtggaagcagaatttaaagggacatgtcaaaattcatacaggtgaggaatttaagtgtaaagagtgtgattataaaacagtgtggaaacattGTCTagaggaacatgtcaaaattcatacaaaggatgaacataagtgtaaagaatgtgattacaaaacagtgcaGAAAAGTAGGCTGAAggcacatgtcaaaattcatacaggtgaggaatttaagtgtaaagaatgtggttataaaacaaCGCGGATATAtattctaaaggaacatgtcaaaattcatacagtgcaGAAAAGTAGGTTAAAggcacatgtcaaaattcatacaaaggatgaatataagtgtaaagaatgtgattataaaacagtatggaaacatagtctaaaggaacatgtcaaaattcatacaggtgaacaatataagtgtaacgattGTGGTTATGAAGCAGTGTGGAAacattgtctaaaggaacatgtcaaaatgcATACAGGCGAacgtgaagaatataagtgcaaagaatgtgattataaaacatcgcggaaacatagtctaaaggaacatgtcaaaattcatacaggtgaacaatataagtgtaaagaatgtgcttatcaaacagtgtggaaacatagtctaaaggaacatgtcaaaattcatacaggcgaggagtttaagtgtaaagaatgtgattataaaacagtgcagaaaaGTAGGCTGAAcgcacatgtcaaaattcatacaggtgatgaatttaagtgtaaagaatgtgattataaaacagtgtggaaacgtTGTCTAGAGGAACATGTCGAAATTCATGCAAAGAATGtacataagtgtaaagattgtgattataaaacaatgcgGAAAAGTAGGctgaaggaacatgtcaaaattcatacaggtgaggaatttaagtgtaaagaatgtgattacaaaacagtgcaGAAAAGTAGGTTAAAggcacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgcgattacaaaacagtgcaGGAAAGTATGCTGAAggcacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaggctgaaggaacatgtcaaaattcatacaggtgaggaatttaagtgtaaagaatgcgattataaaacagtgtggacaCGTTGTCTagaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattttaaaacggtgtggaaacagaatttaaagggacatgtcaaaattcatacaggtgaggaatttaaatgtaaagaatgtgattacaaaacagtgcaGAAAAGTAGGctgaaggaacatgtcaaaattcatacaggtgaggaatttaagtgtaaagaatgtggttataaaacaaCGCGGATATAtattctaaaggaacatgtcaaaattcatacaggcgaggaatttaagtgtaaagagtgtgattataaaacagtgtggaaacataATCTAaggaaacatgtcaaaattcatacaaaggatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatgtAGTCTCAAGGAACATGTCAATATTCATATAGGTTAG
Protein Sequence
MDINSTESCTIKSEIILRETFCGNYEDCGNKELKTEPVNYKELVKCKEDDPTEHMDISAAPIQQCSGNEDNFTTMEKDSPLGHLKTTKNVQYFCKQCNFKTHLECFIKKHLKIHKEVDDTYITKECNGKTPPSFSLATHVKPSKCDEYICNECSFTMLNKNSLSRHMTIHTGKEYKCKTCDYKTVWKRNLKGHVKIHTGEEYKCKECDFKTVWKQNLKGHVKIHTGEKYKCKECDYKTVQKRRLNEHVKIHTGDEYKCKECNYKTVEKSMLNAHVKIHTGEEYKCKECDFKTVWKQNLKGHVKIHTGEEFKCKECDYKTVWKHCLEEHVKIHTKDEHKCKECDYKTVQKSRLKAHVKIHTGEEFKCKECGYKTTRIYILKEHVKIHTVQKSRLKAHVKIHTKDEYKCKECDYKTVWKHSLKEHVKIHTGEQYKCNDCGYEAVWKHCLKEHVKMHTGEREEYKCKECDYKTSRKHSLKEHVKIHTGEQYKCKECAYQTVWKHSLKEHVKIHTGEEFKCKECDYKTVQKSRLNAHVKIHTGDEFKCKECDYKTVWKRCLEEHVEIHAKNVHKCKDCDYKTMRKSRLKEHVKIHTGEEFKCKECDYKTVQKSRLKAHVKIHTGDEYKCKECDYKTVQESMLKAHVKIHTGEEYKCKECDYKTVQKSRLKEHVKIHTGEEFKCKECDYKTVWTRCLEEHVKIHTGEEYKCKECDFKTVWKQNLKGHVKIHTGEEFKCKECDYKTVQKSRLKEHVKIHTGEEFKCKECGYKTTRIYILKEHVKIHTGEEFKCKECDYKTVWKHNLRKHVKIHTKDEYKCKECDYKTVWKCSLKEHVNIHIG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-