Lyun017708.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- SSR1_1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002375.1:3567334-3586659[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.5 49 4.8 0.6 1 23 406 428 406 428 0.96 2 15 0.023 0.33 11.6 0.9 1 23 460 482 460 482 0.98 3 15 0.00013 0.0018 18.8 1.7 1 23 510 532 510 532 0.99 4 15 0.003 0.042 14.4 0.7 1 23 537 559 537 559 0.98 5 15 0.01 0.14 12.8 2.5 1 23 564 586 564 586 0.98 6 15 0.00016 0.0023 18.4 2.7 1 23 591 613 591 613 0.99 7 15 0.0012 0.017 15.6 1.2 1 23 618 640 618 640 0.99 8 15 0.0066 0.093 13.3 0.2 1 23 645 667 645 667 0.98 9 15 9.6e-05 0.0014 19.1 0.7 1 23 672 694 672 694 0.98 10 15 0.0052 0.074 13.7 2.2 1 23 699 721 699 721 0.99 11 15 0.021 0.3 11.8 3.3 1 23 726 748 726 748 0.98 12 15 0.0017 0.024 15.2 1.0 1 23 753 775 753 775 0.99 13 15 6.4e-05 0.0009 19.7 1.6 1 23 780 802 780 802 0.99 14 15 0.003 0.043 14.4 1.7 1 23 807 829 807 829 0.98 15 15 0.00038 0.0053 17.3 0.7 1 23 834 856 834 856 0.99
Sequence Information
- Coding Sequence
- atgAAAAGTGTGTTGTTGCTATTACTGCTGGTATTACCAGCTGCTATATTCATCATTGATGGAGGTAATAAATACGTGGCGTACGCCGAGGAAGACTTAACAGAAGATGAGGGAGAGGCCGAAGTTGAAGGGGAAGCCGATTCCGATGATTTGGCCCCGACGGAgacagaagaggaagaagaagaggtGAAAACATTGGCTTCTCCGGACGCCGATACAACTTTACTGTTTGTTAAACCGATAGTCGCTGGCTCATCCCAATTGGAATTACCTGGTGGAGTGCCAGTAGAATTCTTAGTGGGTTTCCGCAACAAAGGAGAGCAGGATTTCATATTGGAGACTATCGACGCCTCGTTCCGCTATCCCATGGATttcaatttctacattcaaaaCTTTTCAGCAATCGCTTACAATCGTCAAGTATCCCCAACTCACGAAGCAACTCTTGCTTATAGTTTCATACCATCGGAATCTTTTGCGGGGCGTCCGTTTGGATTGAATATAAACTTGGCATACAGGGATTTGTCAGGGAACACTTTCCAAGAGGCCGTTTTTAATGAAACCGTTCAAATTATTGAACTTGATGAAGGTCTTGATGGAGAAACATTCTTCCTATATGTTTTCTTAGCAGCTGGTGTAATTTTACTATTGGTCATTGGACAACAAACGTTATTATCAGTTGGCCGTAAACGTACCAGTCGTAAAGTACCTGTAGAAACTGGTACCAGCAATCCTAACAATGTAGACTACGACTGGTTGCCCCAACAGACACTCGATAGACTAAATAAAGAAAAGAGTCATAAATCACCAAAAGCATCAAAACAACCTGCAAAGCATCTTGCAAAACAACCAGCAAAACAGCCGGCAAAACAGCAGAGTCCAAGACAAAGGAAGACGCAACGTAAAGCAGGATCAGATTTATCTGATACAATGGATATCGACTCGGTAgactttattgaaagttgtgctataaaatcagaagtgattttagcagaaactttttctttttgtgaggAAGattGTGCGAGTAAAGAACTGAAACTGGAGTCAGTAGATTACAAAGAATCGCTTCaatataaagaagaaaatgatctaGTAGAACCGAAAGATACACATGCTACTCCGACACATAGAGATCTTTGTAATGACTATAATTTTACAACAATTGGACAAAATTCTCTAGTAGAACTTTTGAATGCTTCTAAAAGCATTAAATACTCTTGTAGAGAATGTGACTTTTCAACCCAGTTagaattttctataaaagaGCATATGAGCATTCACAATGATGgatataatattgaagaatgtaattttaagacgcCACAGATATTCTCTTCATCACCACagttgaaaattcaaaaaagtgaacatgaatatgtttgtaatgaatgtaattatatcacattgaataaaaatgatttaaagagACATGTAAAGAATCACAAAAGTTGcgaggaatgtgattataatatacAGTGGAAAGGTCACTTCATAGCACATGCTAAAGTTCATTCGGAcaatgagtataagtgtaaagaatgtgattataaaacagtacagaaaagaaatctaatgcaacatgtaaaaattcatacaagtgctgaatataagtgtaaggagtgtgattataaaacggtatggaaaagtaatctaattcaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaacagtatggaaaagtcatctaaaggaacatgtcaaaattcatactggtgacgaatataaatgtaaagaatgtgattataaaacagtacagaaagGTCATCTAACACAACATGTCAAAATACATACCGGCGACaattataagtgtaaagattgtgattataaaacggcatggaaaagtaatctaaagcaacacgtcaaaattcatactggtgacaaatatgagtgtgaagtgtgtgattttaaaactgtatggaaaagtaatctaaaggaacatatcaaaattcatactggtgataaatatatgtgtaaagaatgtgattataaaacagtacagaaaagtaatctagtgcaacatgtcaaaattcacactggtgacaaatataagtgtaaagagtgtgattatacaacaatatggaaaagtcatctaaaggatcatgtcaaaattcataccggtgacgaatataagtgtaaagaatgtgattataaaacactacaGAGAAGCCATCTattgcaacatgtcaaaattcatattggtgacaaatataagtgtaatgagtgtgattataaaacggtatggaaaagtaatttaaagcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgactataaaacagtaaagaaaagtaatctagtgcaacatcttaaaattcatactggtgagaaatataagtgtaaagagtgtgattttaaaacggtatggaaaagtaatctaaagaaacatgtcaaaattcatactagggacaaatataagtgtaaagaatgtgattataaaacagcactGAAAAGTAACCTagtgcaacatgtcaaaattcatactggagACAAAtatgtgtaa
- Protein Sequence
- MKSVLLLLLLVLPAAIFIIDGGNKYVAYAEEDLTEDEGEAEVEGEADSDDLAPTETEEEEEEVKTLASPDADTTLLFVKPIVAGSSQLELPGGVPVEFLVGFRNKGEQDFILETIDASFRYPMDFNFYIQNFSAIAYNRQVSPTHEATLAYSFIPSESFAGRPFGLNINLAYRDLSGNTFQEAVFNETVQIIELDEGLDGETFFLYVFLAAGVILLLVIGQQTLLSVGRKRTSRKVPVETGTSNPNNVDYDWLPQQTLDRLNKEKSHKSPKASKQPAKHLAKQPAKQPAKQQSPRQRKTQRKAGSDLSDTMDIDSVDFIESCAIKSEVILAETFSFCEEDCASKELKLESVDYKESLQYKEENDLVEPKDTHATPTHRDLCNDYNFTTIGQNSLVELLNASKSIKYSCRECDFSTQLEFSIKEHMSIHNDGYNIEECNFKTPQIFSSSPQLKIQKSEHEYVCNECNYITLNKNDLKRHVKNHKSCEECDYNIQWKGHFIAHAKVHSDNEYKCKECDYKTVQKRNLMQHVKIHTSAEYKCKECDYKTVWKSNLIQHVKIHTGDKYKCKECDYKTVWKSHLKEHVKIHTGDEYKCKECDYKTVQKGHLTQHVKIHTGDNYKCKDCDYKTAWKSNLKQHVKIHTGDKYECEVCDFKTVWKSNLKEHIKIHTGDKYMCKECDYKTVQKSNLVQHVKIHTGDKYKCKECDYTTIWKSHLKDHVKIHTGDEYKCKECDYKTLQRSHLLQHVKIHIGDKYKCNECDYKTVWKSNLKQHVKIHTGDKYKCKECDYKTVKKSNLVQHLKIHTGEKYKCKECDFKTVWKSNLKKHVKIHTRDKYKCKECDYKTALKSNLVQHVKIHTGDKYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -