Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000001.1:208428-210314[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.47 6.6 7.5 0.1 2 21 67 86 66 87 0.93

2 18 0.13 1.8 9.3 0.8 1 23 150 172 150 172 0.97

3 18 0.022 0.31 11.7 2.4 1 23 177 199 177 199 0.98

4 18 0.0027 0.038 14.6 0.7 1 23 204 226 204 226 0.98

5 18 0.0036 0.052 14.2 2.2 1 23 231 253 231 253 0.99

6 18 0.0007 0.0099 16.4 2.0 1 23 258 280 258 280 0.99

7 18 0.0068 0.097 13.3 1.1 1 23 285 307 285 307 0.98

8 18 0.0056 0.08 13.6 1.0 1 23 312 334 312 334 0.98

9 18 0.029 0.41 11.3 1.1 1 23 339 361 339 361 0.97

10 18 0.006 0.085 13.5 2.6 1 23 366 388 366 388 0.99

11 18 0.0024 0.034 14.7 2.2 1 23 393 415 393 415 0.99

12 18 0.00038 0.0054 17.2 1.3 1 23 420 442 420 442 0.99

13 18 0.033 0.47 11.1 0.5 1 23 447 469 447 469 0.98

14 18 0.036 0.51 11.0 1.3 1 23 474 496 474 496 0.98

15 18 0.0021 0.03 14.9 2.7 1 23 501 523 501 523 0.99

16 18 0.024 0.34 11.6 4.2 1 23 528 550 528 550 0.98

17 18 0.00033 0.0047 17.4 1.7 1 23 555 577 555 577 0.99

18 18 0.00012 0.0018 18.8 0.3 1 20 582 601 582 603 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.47	6.6	7.5	0.1	2	21	67	86	66	87	0.93
2	18	0.13	1.8	9.3	0.8	1	23	150	172	150	172	0.97
3	18	0.022	0.31	11.7	2.4	1	23	177	199	177	199	0.98
4	18	0.0027	0.038	14.6	0.7	1	23	204	226	204	226	0.98
5	18	0.0036	0.052	14.2	2.2	1	23	231	253	231	253	0.99
6	18	0.0007	0.0099	16.4	2.0	1	23	258	280	258	280	0.99
7	18	0.0068	0.097	13.3	1.1	1	23	285	307	285	307	0.98
8	18	0.0056	0.08	13.6	1.0	1	23	312	334	312	334	0.98
9	18	0.029	0.41	11.3	1.1	1	23	339	361	339	361	0.97
10	18	0.006	0.085	13.5	2.6	1	23	366	388	366	388	0.99
11	18	0.0024	0.034	14.7	2.2	1	23	393	415	393	415	0.99
12	18	0.00038	0.0054	17.2	1.3	1	23	420	442	420	442	0.99
13	18	0.033	0.47	11.1	0.5	1	23	447	469	447	469	0.98
14	18	0.036	0.51	11.0	1.3	1	23	474	496	474	496	0.98
15	18	0.0021	0.03	14.9	2.7	1	23	501	523	501	523	0.99
16	18	0.024	0.34	11.6	4.2	1	23	528	550	528	550	0.98
17	18	0.00033	0.0047	17.4	1.7	1	23	555	577	555	577	0.99
18	18	0.00012	0.0018	18.8	0.3	1	20	582	601	582	603	0.95

Sequence Information

Coding Sequence: atggatgttgattccattgaaaattgtgcaataaaatctgaagtgattttaatgGAAACGTTTTGTAGACAATATGGAGGCTATGGGGATGAACAACTAAAAACAGAGCCAGTAGACTacgaagaatcttttaaatgtaaggaagaagATATTTCTGTAGAGCAGACAGGTGTGCATGCTGCTCCGTCTGAACAATTATCTTGTAATGAGTGTGACTTTATGACAATGGAAAaagattctctaatagaacacttgaaaattgctaaaaactttcaatatttttgtaaggagtGTAACTTTACAACCCATTTACAATGTTCCATAAAAAAGCATTTTGAGATTCACAAAggtgtagataataaatatattattgaagGAAGTAATTTTCAATCATCACAGAATTTCTGTTTAACACCACAGTGGAAAACTTCAAAAAGCGgtgacaaatatatttgtaatgaatgtaattatacaacATTAATCAAGAATTCTCTAAgaagacatgttaaaattcataaagagactgaatataagtgtaaagaatgtgactacaaaacgtTGCAAAAAGATAGACTAAAGcaacatcttaaaattcatacaggtgatgaatataagtgtaacgaatgtggttataaaacagtgtggcaaagtagTCTGAAGAACCATGaaaaaattcattctggtgtcaaatataagtgtaaagagtgtgactataaaacagtgtggcaacaTAATCttaaggaacacatcaaaattcatgcgggtgatgaatataagtgtaaagaatgtgactataaaacagtgaaaaaaaatcttttaaagcaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaagaatcatgaaaaaattcattcgggtgttaaatataagtgtaaagaatgtgactatcaAACTGTGTGGCAATATAATCTAAAGCAACACGTCAAAATACATgcagatgatgaatataagtgtgaagaatgtgactataaaacagcgTGGCAAcataatctaaagcaacatgaagaaattcatgcagatgatgaatataagtgtaaagagtgtgattataaaacagggCAAAAACGATATAtgaagcaacatgtcaaaattcatgcaggtgttaaatataaatgttcagaatgtgactataaaacagtgcagaaaCGATATAtgaagcaacatgtcaaaattcatgcaggtcttaaatataagtgtaaagaatgtgactatgaAACGGTGCGAAAAGATAgactaaagcaacatgtcaaaattcatacaggtgatgagtataagtgtaaggaatgtgattataaaacagtgtggcaacgTAGTCTAgaggaacatgttaaaattcatacaggcaatgaacataagtgtaaagaatgtgattatagaacagTGTGGCAACGTAGTCTagaggaacacatcaaaattcatacaggtgatgtatataaatgtaaagaatgtgactataaaacagtgcaaaaacgATATAtgaagcaacatgtcaaaattcattcagactatgaatataagtgtgaagaatgtgactataaaacaatgcaaaaacGATATATGAAGcatcatgtaaaaattcatgcaggtgttgaatataagtgtaaagaatgtgattataaaacgatgCGAAAAGATAGTTTAAGgttacatgtcaaaattcacacaggtgaagaatataaatgtaatgaatgtgactataaaacggtgCGAAAAGATAGCCTAAAGCGacatgtgattataaaacagtgtgcaAAAATGAACTAA
Protein Sequence: MDVDSIENCAIKSEVILMETFCRQYGGYGDEQLKTEPVDYEESFKCKEEDISVEQTGVHAAPSEQLSCNECDFMTMEKDSLIEHLKIAKNFQYFCKECNFTTHLQCSIKKHFEIHKGVDNKYIIEGSNFQSSQNFCLTPQWKTSKSGDKYICNECNYTTLIKNSLRRHVKIHKETEYKCKECDYKTLQKDRLKQHLKIHTGDEYKCNECGYKTVWQSSLKNHEKIHSGVKYKCKECDYKTVWQHNLKEHIKIHAGDEYKCKECDYKTVKKNLLKQHVKIHTGDEYKCKECDYKTVWQSSLKNHEKIHSGVKYKCKECDYQTVWQYNLKQHVKIHADDEYKCEECDYKTAWQHNLKQHEEIHADDEYKCKECDYKTGQKRYMKQHVKIHAGVKYKCSECDYKTVQKRYMKQHVKIHAGLKYKCKECDYETVRKDRLKQHVKIHTGDEYKCKECDYKTVWQRSLEEHVKIHTGNEHKCKECDYRTVWQRSLEEHIKIHTGDVYKCKECDYKTVQKRYMKQHVKIHSDYEYKCEECDYKTMQKRYMKHHVKIHAGVEYKCKECDYKTMRKDSLRLHVKIHTGEEYKCNECDYKTVRKDSLKRHVIIKQCAKMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -