Lyun007853.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001323.1:2164154-2166324[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.2 2.9 8.6 1.0 1 23 139 161 139 161 0.97
2 21 9.1e-05 0.0013 19.2 1.6 1 23 166 188 166 188 0.99
3 21 0.03 0.43 11.3 1.7 1 23 193 215 193 215 0.98
4 21 0.74 11 6.9 0.4 1 23 220 242 220 242 0.91
5 21 0.0012 0.017 15.7 3.9 1 23 247 269 247 269 0.99
6 21 0.0012 0.017 15.7 3.9 1 23 274 296 274 296 0.99
7 21 0.0012 0.017 15.7 3.9 1 23 301 323 301 323 0.99
8 21 0.0012 0.017 15.7 3.9 1 23 328 350 328 350 0.99
9 21 0.03 0.43 11.3 1.7 1 23 355 377 355 377 0.98
10 21 0.74 11 6.9 0.4 1 23 382 404 382 404 0.91
11 21 0.00014 0.0019 18.6 3.7 1 23 409 431 409 431 0.99
12 21 0.0012 0.017 15.7 3.9 1 23 436 458 436 458 0.99
13 21 0.0012 0.017 15.7 3.9 1 23 463 485 463 485 0.99
14 21 0.044 0.62 10.8 2.9 1 23 490 512 490 512 0.98
15 21 2e-05 0.00029 21.2 1.3 1 23 517 539 517 539 0.99
16 21 0.044 0.62 10.8 2.9 1 23 544 566 544 566 0.98
17 21 0.35 5 7.9 0.3 1 23 571 593 571 593 0.95
18 21 0.61 8.7 7.1 5.7 1 23 598 620 598 620 0.98
19 21 0.012 0.18 12.5 0.6 1 23 625 647 625 647 0.98
20 21 0.027 0.39 11.4 0.5 1 23 652 674 652 674 0.98
21 21 0.1 1.5 9.6 2.4 1 23 679 701 679 701 0.98

Sequence Information

Coding Sequence
ATGGATGTTGATTCCATTGaaagttttgcaattaaatCTGAAGTGAATTTGACAGAAACTTTTTCCTTTTGTGAAGAGTACAAAGATTGTGTGAATGCAGAATTGAAAACCAAGGCAGTAAATTGTGAAGAATCATTTAAATGTAAGAAAGAAGATGATCCTGCTCCGTTCCAACAATATTTCTTTAATGAGTCTAATTTTGTGAAAACGGAAAAAGAATCCCTaatagaacatttaaaaattactaaagagcttcaatatttttgtaaaaggtGTAATTTTAAAACCTGGCTAGATGGTTCTATAAAAGAGCATTTGAGGACTCATAATGAAGTACATGTTGGATATATTACTAAGGAATCTAATTTTAAGACGCTAACACCACAGATAAAGATTGAAAAAAATGGTGACCAGTATatgtgtaatgaatgtaattataccacattagtaaaaaattatttaagaagtcatgtaaaaattcatacaggtaataaatataagtgtaaagaatgtgattataaaactgtgcggAAATATTCTCTtcaggaacatgtcaaaattcacacaggtaatgaatataaatgtaaagaatgtgattataaaacagtgtggaaacgttatctaaaagatcatttaaaaattcacacaggtgatgaatataaatgtaaagaatgcgattataaaacagcgtggAAAGGTCGTTTAATgggacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtaaaaattcacacaggtaatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtcaaaattcacacaggtaatgaatataaatgtaaagaatgtgattataaaacagtgtggaaacgttatctaaaagatcatttaaaaattcacacaggtgatgaatataaatgtaaagaatgcgattataaaacagcgtggAAAGGTCGTTTAATgggacatgtcaaaattcacacaggtgatgaatataaatgtaaaatatgtgattataaaacagtgtttAAAGATCATCTAAAGcaacacattaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtcaaaattcacacaggtaatgaatataaatgtaaagaatgtgattataaaactgtgcggAAATATTGTCTtcaggaacatgtcaaaattcacacaggtaatgaatataaatgtaaagaatgtgattataaaacagtgtggaaacgtCATCTAAAAgatcatgtaaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgaggaaagataatctaaaggaacacgtAAAagttcacacaggtgatgaatataaatgtaaagaatgcgactataaaacagtgtggaaacgtCATCTAAAAgatcatgtaaaaattcacacaggtgatgaatataaatgtaatgaatgtgattataaaacagtgtggataAATAGTCTAaatgaacatgtcaaaattcatacaaatgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaatgtcatctaaaggaacatttaaaacttcatacaggtgaagaatataaatgtaaagaatgtgactataaaacggtgtggaaaGGTGGTTTaaagaaacatgtaaaaattcatactggtgatgtatataaatgtaaagaatgtgattttaaaacagtgctTTTAAAGAGTCTAAttgaacatgtcaaaattcatacaattgatgaatataaatgtaaagaatgtgattataaaacagtgtgcaAAGGTCTtctaaaagaacatgtaaaGATTCACATCGGTGATTaa
Protein Sequence
MDVDSIESFAIKSEVNLTETFSFCEEYKDCVNAELKTKAVNCEESFKCKKEDDPAPFQQYFFNESNFVKTEKESLIEHLKITKELQYFCKRCNFKTWLDGSIKEHLRTHNEVHVGYITKESNFKTLTPQIKIEKNGDQYMCNECNYTTLVKNYLRSHVKIHTGNKYKCKECDYKTVRKYSLQEHVKIHTGNEYKCKECDYKTVWKRYLKDHLKIHTGDEYKCKECDYKTAWKGRLMGHVKIHTGDEYKCKECDYKTVRKYCLQEHVKIHTGDEYKCKECDYKTVRKYCLQEHVKIHTGDEYKCKECDYKTVRKYCLQEHVKIHTGNEYKCKECDYKTVRKYCLQEHVKIHTGNEYKCKECDYKTVWKRYLKDHLKIHTGDEYKCKECDYKTAWKGRLMGHVKIHTGDEYKCKICDYKTVFKDHLKQHIKIHTGDEYKCKECDYKTVRKYCLQEHVKIHTGNEYKCKECDYKTVRKYCLQEHVKIHTGNEYKCKECDYKTVWKRHLKDHVKIHTGDEYKCKECDYKTVRKDNLKEHVKVHTGDEYKCKECDYKTVWKRHLKDHVKIHTGDEYKCNECDYKTVWINSLNEHVKIHTNDEYKCKECDYKTVWKCHLKEHLKLHTGEEYKCKECDYKTVWKGGLKKHVKIHTGDVYKCKECDFKTVLLKSLIEHVKIHTIDEYKCKECDYKTVCKGLLKEHVKIHIGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-