Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001557.1:68664-70685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.7 38 5.1 1.2 1 23 99 121 99 121 0.95

2 18 0.037 0.53 11.0 0.5 1 23 153 175 153 175 0.98

3 18 8.3 1.2e+02 3.6 0.2 1 17 207 223 207 224 0.92

4 18 0.021 0.3 11.7 2.5 1 23 234 256 234 256 0.99

5 18 0.027 0.38 11.4 0.8 1 23 261 283 261 283 0.98

6 18 0.18 2.5 8.9 2.8 1 23 288 310 288 310 0.98

7 18 0.0002 0.0029 18.1 2.5 1 23 315 337 315 337 0.98

8 18 0.0034 0.048 14.2 0.5 1 23 342 364 342 364 0.98

9 18 0.0019 0.028 15.0 5.9 1 23 369 391 369 391 0.98

10 18 7e-05 0.00099 19.6 3.2 1 23 396 418 396 418 0.99

11 18 0.00033 0.0047 17.4 1.4 1 23 423 445 423 445 0.99

12 18 0.00011 0.0016 18.9 2.1 1 23 450 472 450 472 0.98

13 18 8.1 1.1e+02 3.6 0.5 1 23 477 499 477 499 0.95

14 18 0.0048 0.068 13.8 1.1 1 23 504 526 504 526 0.98

15 18 5.3e-05 0.00076 19.9 1.9 1 23 531 553 531 553 0.99

16 18 0.00011 0.0016 18.9 2.8 1 23 558 580 558 580 0.98

17 18 0.14 2 9.1 0.6 1 23 585 607 585 607 0.98

18 18 1.1e-05 0.00016 22.1 2.2 1 23 612 634 612 634 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.7	38	5.1	1.2	1	23	99	121	99	121	0.95
2	18	0.037	0.53	11.0	0.5	1	23	153	175	153	175	0.98
3	18	8.3	1.2e+02	3.6	0.2	1	17	207	223	207	224	0.92
4	18	0.021	0.3	11.7	2.5	1	23	234	256	234	256	0.99
5	18	0.027	0.38	11.4	0.8	1	23	261	283	261	283	0.98
6	18	0.18	2.5	8.9	2.8	1	23	288	310	288	310	0.98
7	18	0.0002	0.0029	18.1	2.5	1	23	315	337	315	337	0.98
8	18	0.0034	0.048	14.2	0.5	1	23	342	364	342	364	0.98
9	18	0.0019	0.028	15.0	5.9	1	23	369	391	369	391	0.98
10	18	7e-05	0.00099	19.6	3.2	1	23	396	418	396	418	0.99
11	18	0.00033	0.0047	17.4	1.4	1	23	423	445	423	445	0.99
12	18	0.00011	0.0016	18.9	2.1	1	23	450	472	450	472	0.98
13	18	8.1	1.1e+02	3.6	0.5	1	23	477	499	477	499	0.95
14	18	0.0048	0.068	13.8	1.1	1	23	504	526	504	526	0.98
15	18	5.3e-05	0.00076	19.9	1.9	1	23	531	553	531	553	0.99
16	18	0.00011	0.0016	18.9	2.8	1	23	558	580	558	580	0.98
17	18	0.14	2	9.1	0.6	1	23	585	607	585	607	0.98
18	18	1.1e-05	0.00016	22.1	2.2	1	23	612	634	612	634	0.99

Sequence Information

Coding Sequence: ATGATGGATTTAGACTCGGTAGATTTTATTGAAAGTTGTAGTATAAAATCAGAggtgattttaacagaaaaattttctttttgcggGAAATACAAAGATTGGGGGAGTAATGAACTTAAACTGGAGACGGTAGATTACGAAGAATCGCTTAAacctaaaaaagaaaatgatctGGTAGAACCCGTACATTTACAAGCTGCTCCGATACACCGAGATTTCTGCAATGActctaattttaaaacaattggaGAAACTTCTTTACTAGAGGTTTTGGAAGTTACTAAAAGTGGTAAATACTCTTGTaacgaatgtaattttacaaccGAGTTGGAATGTTCTATAATAGAGCATACGAGGATTCATAGTGACGaatataatattgaagaatgtaattttgagaCACCACAGATTTCCACTCTATCATCACAGTTGATAACTCCAAGAAGTGCGAATCAAtatgtttgtaatgaatgtaattatatcACATTGAACAAAAATGATCTAAGCAAACATGTGAAGATTCACAAAGGTGTAACATATAGTTGcgagaaattttattataatacaggGTGGAAAAGTCACTTCACAGCACATGGAGAAATTCATTCGGATGATAAAtataactgtacaaaatgtgtttATGAAAGTGTACGGAAAAGTGAGCTAATGCAGCAggtcaaaattcatacgggtgatggatataaatgtaaagaatgcgattacAAAACTATATGGAAACaacatctaaaggaacatgtcagaattcatgcaggtgatgtgtataagtgtaaagaatgtgattataaaactatatggaaacaacttctaaaggaacatgtcagaATTCATGCAgttgatgaatataagtgtaaagaatgcgattataaaactatatggaaacaatgtctaaaggaacatgtcagaattcatgcaggtgatgaatacaagtgtaaagagtgtgattataaaactatacgAAAAAgttatctaatgcaacatgtcaaaaatcatactggtgacaaatataagtgtaaagaatgtgattatgaaactgtatggaaaagtaacctaatgcaacatgtcaaaattcatataggtgataaatatcattgtaaagaatgcaattataaaactgtacggagAAGTCATCTAAcacaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtacaaaaaagtcatctaaaggaacatgtgaaaattcacacaggtgatgaatataagtgtaacgaatgtgattataaaactgtacagaaaagtcgtctaaaggaacatgtcaaaattcataccggtgacaaatataagtgtaaagaatgtgattatagaactgtacggaaaagtgatctaatgcaacatttcaaaattcatacaggtgatgaatataaatgtattgaatgtgattataaaacagtatggcgAAGtcgtttaaaggaacatgttaaaattcattctggtgatgaatataaatgtgtagaatgtgattataaaacggtacggaaaaatcgtctaaaggaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtaattataaaactgtacagaaaagtaatctaaagggacatctcaaaattcatactggtgacaaatttaaatgtaaagaatgtgattataggACTGTAAGGAAAAGTGATCTAAagcaacatttcaaaattcatacaggtgatgaatataaatgtaatgtatgtgattataaaacagtatggacaagtcgtttaaaggaacatgtcagaatacattctggtgatgaatataagtgtaaagaatgtgattttaaaactgtacgaAAAAGTAATCTGAAGCAACATGtcagaattcatactggtgacaaatataaatgcaatgaatgtgattatCAAACAGTATGGAGAAATAGTCTCTAA
Protein Sequence: MMDLDSVDFIESCSIKSEVILTEKFSFCGKYKDWGSNELKLETVDYEESLKPKKENDLVEPVHLQAAPIHRDFCNDSNFKTIGETSLLEVLEVTKSGKYSCNECNFTTELECSIIEHTRIHSDEYNIEECNFETPQISTLSSQLITPRSANQYVCNECNYITLNKNDLSKHVKIHKGVTYSCEKFYYNTGWKSHFTAHGEIHSDDKYNCTKCVYESVRKSELMQQVKIHTGDGYKCKECDYKTIWKQHLKEHVRIHAGDVYKCKECDYKTIWKQLLKEHVRIHAVDEYKCKECDYKTIWKQCLKEHVRIHAGDEYKCKECDYKTIRKSYLMQHVKNHTGDKYKCKECDYETVWKSNLMQHVKIHIGDKYHCKECNYKTVRRSHLTQHVKIHTGDEYKCKECDYKTVQKSHLKEHVKIHTGDEYKCNECDYKTVQKSRLKEHVKIHTGDKYKCKECDYRTVRKSDLMQHFKIHTGDEYKCIECDYKTVWRSRLKEHVKIHSGDEYKCVECDYKTVRKNRLKEHVKIHTGDEYKCKECNYKTVQKSNLKGHLKIHTGDKFKCKECDYRTVRKSDLKQHFKIHTGDEYKCNVCDYKTVWTSRLKEHVRIHSGDEYKCKECDFKTVRKSNLKQHVRIHTGDKYKCNECDYQTVWRNSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -