Lyun011474.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2306845-2308478[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0069 0.098 13.3 0.1 1 21 68 88 68 89 0.95
2 15 0.035 0.5 11.0 0.7 1 23 139 161 139 161 0.97
3 15 0.098 1.4 9.6 0.7 1 23 166 188 166 188 0.98
4 15 0.083 1.2 9.9 0.9 1 23 193 215 193 215 0.98
5 15 4e-05 0.00057 20.3 2.9 1 23 220 242 220 242 0.99
6 15 1e-05 0.00015 22.2 2.8 1 23 247 269 247 269 0.99
7 15 0.8 11 6.8 0.5 1 23 274 296 274 296 0.98
8 15 0.0011 0.016 15.8 2.0 1 23 301 323 301 323 0.99
9 15 0.0052 0.074 13.7 1.4 1 23 328 350 328 350 0.99
10 15 0.00092 0.013 16.0 0.8 1 23 355 377 355 377 0.99
11 15 0.0081 0.12 13.1 2.7 1 23 382 404 382 404 0.98
12 15 1.7e-05 0.00024 21.5 2.8 1 23 409 431 409 431 0.99
13 15 0.00037 0.0052 17.3 1.5 1 23 436 458 436 458 0.99
14 15 4.4e-05 0.00063 20.2 3.7 1 23 463 485 463 485 0.98
15 15 0.009 0.13 12.9 4.2 1 23 490 512 490 512 0.99

Sequence Information

Coding Sequence
atggACGTCGATTCTATtgaaaattgtgcaataaaatctgaagtgattttaacagaaacgtttTCGTTTTGTGGACGATACAGAGATTATGTGGACAAAGTAGTAAAAAGAGAGCCTGTAGATTacgaagaatcttttaaatgtaagaaAGAAGACATATCTGAAGAGCAGATGGGCATGCATTCTGCTCTGATGcaacaattttcttgtaatgagtgtGACTTTATGACAGTACAAAAAGAATCTTTAATAGAACACttgaaaattaccaaaaatgcTCAATATTCTTGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTCAGTACAAAAGCATTTCGAGATTCACAAAAGGaCATCACAGAATGTCTGTTTAACACCACAGTGCAAAACTCCAAAAAGTGAtgataaatatatttgtaacgAATGTAATTATACTACATTAATCAGAAGCTCTCTAAgaagacatgttaaaattcataaagggattgaatataagtgtaaagaatgtgattttaaaacagcatggcaaagtcgtctaaatgaacatgtcaaaattcataaaggggctgaatataagtgtaaagaatgtgattttaaaacagcatggcaaagtcgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgcgattataaaacagtgcgaaaagatcatCTAAAggtacatgtcaaaattcatacaggtgttaaatttaaatgtaaagaatgtgactataaaacagtgcgaaaagatcatctaaaggcacatatcaaaattcatacaggtgataaatataagtgtacagtatgtgtttataaaacagcatggcaaagtcgtctaaaggaacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtgactataaaacagtgcggaaaaatcgtctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggcaaagtagtctaaaggaacatgttaaaaaacatacaggtgacgaatataagtgtaacgaatgtgactataaaacagtgcgaggAAATTCCCTAAAGGAACacctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacggtgCGAAAAAGTTTCATAAAGGAACATGTCAGatttcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagatcatCTAAAGGTACAtgtgagaattcatacaggtgatcaatacaaatgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatatgggTGATGAATatgaatgtaaagaatgtgactataaaactgtgcgaaaagatcatctaaagaaacatgtcaaaagtcatacaggtgatgaatataagtgtaaagaatgtaattataaaacaccatggaaatcTTGTCTAAAAGCACATATGAAAAGACACAGGTGA
Protein Sequence
MDVDSIENCAIKSEVILTETFSFCGRYRDYVDKVVKREPVDYEESFKCKKEDISEEQMGMHSALMQQFSCNECDFMTVQKESLIEHLKITKNAQYSCKECNFTTQLQCSVQKHFEIHKRTSQNVCLTPQCKTPKSDDKYICNECNYTTLIRSSLRRHVKIHKGIEYKCKECDFKTAWQSRLNEHVKIHKGAEYKCKECDFKTAWQSRLKEHVKIHTGDEYKCKECDYKTVRKDHLKVHVKIHTGVKFKCKECDYKTVRKDHLKAHIKIHTGDKYKCTVCVYKTAWQSRLKEHVKIHTGDEYKCKECDYKTVRKNRLKEHVKIHTGDEYKCKECDYKTVWQSSLKEHVKKHTGDEYKCNECDYKTVRGNSLKEHLKIHTGDEYKCKECDYKTVRKSFIKEHVRFHTGDEYKCKECDYKTVRKDHLKVHVRIHTGDQYKCKECDYKTVRKDRLKEHVKIHMGDEYECKECDYKTVRKDHLKKHVKSHTGDEYKCKECNYKTPWKSCLKAHMKRHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-