Lyun019328.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002652.1:1761097-1763823[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.00018 0.0026 18.3 3.1 1 23 147 169 147 169 0.98
2 25 0.021 0.29 11.8 3.5 1 23 174 196 174 196 0.98
3 25 0.022 0.31 11.7 0.9 1 23 201 223 201 223 0.98
4 25 0.045 0.64 10.7 1.8 1 23 228 250 228 250 0.98
5 25 3.2 45 4.9 3.7 1 23 255 277 255 277 0.96
6 25 0.18 2.5 8.8 2.5 1 23 282 304 282 304 0.98
7 25 0.00085 0.012 16.1 1.8 1 23 309 331 309 331 0.99
8 25 0.21 3 8.6 1.6 1 23 336 358 336 358 0.97
9 25 0.078 1.1 10.0 1.8 1 23 363 385 363 385 0.98
10 25 0.1 1.5 9.6 2.3 1 23 390 412 390 412 0.98
11 25 0.0091 0.13 12.9 1.8 1 23 417 439 417 439 0.99
12 25 5.7 81 4.1 0.4 1 9 444 452 444 466 0.84
13 25 0.18 2.6 8.8 0.9 1 21 489 509 489 510 0.95
14 25 0.00023 0.0033 17.9 2.5 1 23 516 538 516 538 0.99
15 25 0.011 0.16 12.6 2.1 1 23 543 565 543 565 0.99
16 25 0.011 0.15 12.7 1.1 1 23 570 592 570 592 0.98
17 25 0.019 0.27 11.9 1.8 1 23 597 619 597 619 0.98
18 25 0.00085 0.012 16.1 1.8 1 23 624 646 624 646 0.99
19 25 0.76 11 6.8 1.0 1 23 651 673 651 673 0.97
20 25 0.011 0.15 12.7 1.1 1 23 678 700 678 700 0.98
21 25 0.011 0.15 12.7 1.1 1 23 705 727 705 727 0.98
22 25 0.011 0.15 12.7 1.1 1 23 732 754 732 754 0.98
23 25 0.0095 0.13 12.8 0.8 1 23 759 781 759 781 0.98
24 25 0.0095 0.13 12.8 0.8 1 23 786 808 786 808 0.98
25 25 0.011 0.15 12.7 1.1 1 23 813 835 813 835 0.98

Sequence Information

Coding Sequence
ATGGATATAGATTATATTGAAAGATATTTGATAAAATCGGAAGTGActgtaaatgaaacattttccgaatttggaaaatatgaagattatggaaatgaagaattaaaaacgGAGCAGTTAGATTTAGAAAAATCTCTAAAATGCGAAGTGAATGATAATCTTGTGGAACACACCAAAGTACATGATGTACCCATTATTCagtatatttgtaatgaaaGTAATTATATTACTGTGGAAAAAGATtctttaatagaaaatttaaatattactaaCAATGTTCGgtatttttgtaaggaatggAACTCTAAAACATTGTCACAATGTTCAATAAAAGAACACTTCAGGGTTCATAACAAGGGTGTTGGTAGATATATTCCTAAAAAACGTAATTCGAAAACACAAGTTCTTTCTTTAACAACACAAAAAAGTGATGATAAATATgtttgtaaggaatgtgattacaaaacagtgagAAAATGTAATCTGAAtatgcatatgaaaattcatacaggctgTGAACATaggtgtaatgaatgtgactataaaacacgatggaaaaataatctaaagcgacatgtgaaaattcatactgatgctgaatataaatgtcaagaatgtgattataaaacacggtGGAAGGAGAGTCTAagggaacatgtgaaaattcatactgatgatgaatataagtgtaataagtgtgattttaaaacagtatggaagaaaaatctaaaagaacatgtgaaaattcatactgatgctttatataagtgtaatgaatgtgattataaaacatggtgtaaaaataatttaaagcaacatgtgaaaattcatactaatGAAGAAcacaagtgtaaagaatgtgattttaaaacaccatggaaaaaaaatctaaaagagcatgtgaaaattcatactgatgtattatataagtgtaaggaatgtgattataaaacaccatggaaaaataatttaaaaaaacatatgaaaattcatacggATGAAGTATATAATTGTAAggtatgtgattataaaacacaatggaaaaatagtttaaagcgacatgtgaaaattcatactgatgatgaatataagtgtcaaGAATGTACTTATAAAACAcgatggaaacagaatctaagggaacatgtgaaaattcatactgatgatgaatataagtgtaaaaagtgtaattttaaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgctttatataagtgtaatgaatgtgattatacaacacggtggaaaaataatataaaacgacatttgaaaattcatagtaatgaagaatataagtgtaaggaatgtggcTATAAACCACGGTGGGAAAGGAATCTAAACGAACATCCCAAAATTCACACCAATGATGATTATAAGTGTAccaaatgtgattttaaaacaccatggaaaacaattgaccatgaatataagtgtaataagtgtgattttaaaacaccatggaaaaaaaatctaaaggaacatttgaaaatttatactgatgatgaatataagtgtaaaaaatgtgattataaaactccACAGAAAAACAATCTAAGCAAAcacgtgaaaattcatactgatgatgaatataagtgtaaggaatgtgattatacaacacggtggaaaaataatataaaacgacatttgaaaattcatactgatgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgatgaatataagtgtaaaaaatgtgattataaaacaccatggaaaaaaaatctaaaagagcatgtgaaaattcatactgatgtattatataagtgtaaggaatgtgattataaaacaccatggaaaaataatttaaaaaaacatatgaaaattcatacggATGAAGTATATAATTGTAAggtatgtgattataaaacacaatggaaaaatagtctaaaagaacatgtgaaaattcatactgatgctttatataagtgtaaggaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgatgaatataagtgtaatgaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgctttatataagtgtaatgaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgatgaatataagtgtaaggaatgtgattataaaacaccatggaaaaaaaatctaaaagaacatgtgaaaattcatactgatgctttatataagtgtaatgaatgtgattataaaacaccatggaaaacaatgtaa
Protein Sequence
MDIDYIERYLIKSEVTVNETFSEFGKYEDYGNEELKTEQLDLEKSLKCEVNDNLVEHTKVHDVPIIQYICNESNYITVEKDSLIENLNITNNVRYFCKEWNSKTLSQCSIKEHFRVHNKGVGRYIPKKRNSKTQVLSLTTQKSDDKYVCKECDYKTVRKCNLNMHMKIHTGCEHRCNECDYKTRWKNNLKRHVKIHTDAEYKCQECDYKTRWKESLREHVKIHTDDEYKCNKCDFKTVWKKNLKEHVKIHTDALYKCNECDYKTWCKNNLKQHVKIHTNEEHKCKECDFKTPWKKNLKEHVKIHTDVLYKCKECDYKTPWKNNLKKHMKIHTDEVYNCKVCDYKTQWKNSLKRHVKIHTDDEYKCQECTYKTRWKQNLREHVKIHTDDEYKCKKCNFKTPWKKNLKEHVKIHTDALYKCNECDYTTRWKNNIKRHLKIHSNEEYKCKECGYKPRWERNLNEHPKIHTNDDYKCTKCDFKTPWKTIDHEYKCNKCDFKTPWKKNLKEHLKIYTDDEYKCKKCDYKTPQKNNLSKHVKIHTDDEYKCKECDYTTRWKNNIKRHLKIHTDDEYKCKECDYKTPWKKNLKEHVKIHTDDEYKCKKCDYKTPWKKNLKEHVKIHTDVLYKCKECDYKTPWKNNLKKHMKIHTDEVYNCKVCDYKTQWKNSLKEHVKIHTDALYKCKECDYKTPWKKNLKEHVKIHTDDEYKCKECDYKTPWKKNLKEHVKIHTDDEYKCKECDYKTPWKKNLKEHVKIHTDDEYKCNECDYKTPWKKNLKEHVKIHTDALYKCNECDYKTPWKKNLKEHVKIHTDDEYKCKECDYKTPWKKNLKEHVKIHTDALYKCNECDYKTPWKTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-