Lyun008848.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:658736-667850[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.69 9.7 7.0 0.1 1 21 68 88 68 89 0.95
2 36 0.25 3.6 8.4 2.6 1 23 152 174 152 174 0.98
3 36 0.22 3.1 8.5 2.9 1 23 179 201 179 201 0.98
4 36 0.0022 0.031 14.9 3.1 1 23 206 228 206 228 0.98
5 36 1.1 16 6.3 2.1 1 23 233 255 233 255 0.97
6 36 0.00034 0.0048 17.4 1.6 1 23 260 282 260 282 0.99
7 36 0.0039 0.055 14.1 1.8 1 23 287 309 287 309 0.99
8 36 0.018 0.26 12.0 0.5 1 23 314 336 314 336 0.98
9 36 0.0049 0.069 13.8 3.1 1 23 341 363 341 363 0.98
10 36 3.9 55 4.6 0.4 3 23 370 390 368 390 0.96
11 36 0.00027 0.0038 17.7 2.9 1 23 395 417 395 417 0.99
12 36 0.00095 0.013 16.0 1.2 1 23 422 444 422 444 0.99
13 36 0.31 4.5 8.1 2.5 1 23 449 471 449 471 0.98
14 36 0.097 1.4 9.7 0.8 1 23 476 498 476 498 0.97
15 36 0.1 1.4 9.6 2.3 1 23 503 525 503 525 0.98
16 36 2.3 32 5.4 0.3 2 23 543 564 543 564 0.96
17 36 1 14 6.5 1.6 1 23 569 591 569 591 0.96
18 36 0.23 3.3 8.5 1.4 1 23 596 618 596 618 0.98
19 36 2.3 32 5.4 0.3 2 23 636 657 636 657 0.96
20 36 2.1 29 5.5 0.3 2 23 675 696 674 696 0.96
21 36 0.32 4.6 8.0 2.0 1 23 701 723 701 723 0.96
22 36 0.23 3.3 8.5 1.4 1 23 728 750 728 750 0.98
23 36 0.049 0.7 10.6 1.2 1 23 882 904 882 904 0.98
24 36 1.4 20 6.0 1.6 1 23 909 931 909 931 0.95
25 36 0.0053 0.075 13.6 2.9 1 23 936 958 936 958 0.97
26 36 1.1 16 6.3 2.1 1 23 963 985 963 985 0.97
27 36 0.0013 0.018 15.6 1.6 1 23 990 1012 990 1012 0.99
28 36 0.014 0.2 12.3 2.0 1 23 1017 1039 1017 1039 0.98
29 36 0.53 7.5 7.4 2.5 1 23 1044 1066 1044 1066 0.98
30 36 1.1 16 6.3 2.1 1 23 1071 1093 1071 1093 0.97
31 36 0.0012 0.017 15.7 1.6 1 23 1098 1120 1098 1120 0.99
32 36 0.014 0.2 12.3 2.0 1 23 1125 1147 1125 1147 0.98
33 36 0.53 7.5 7.4 2.5 1 23 1152 1174 1152 1174 0.98
34 36 1.7 24 5.8 3.0 1 23 1179 1201 1179 1201 0.95
35 36 1.1 16 6.3 2.1 1 23 1206 1228 1206 1228 0.97
36 36 0.00037 0.0052 17.3 1.7 1 23 1233 1255 1233 1255 0.99

Sequence Information

Coding Sequence
atggATTTTGAATCCAAAGAAAGTGGTGTtataaaatctgaagtgattttaaccGAAACATTTTCGTTTTGTGAACAATACAGAGATTATGGGGACAAAGGACTGAAAACAGAACCAGTAGATTacgaagaatcttttaaatgtaaagaagaaGATATTTCTGTAGAGCATACAGGAGCAGTTGCTACATTGATGcaacaattttcttgtaatCGGTGTGACTTTGTGACAATGGAAAaagattctctaatagaacacttaaaaattatgaaaaatgttcaatatttttgtaatgaatgtaactttacaacccAGTTACAATGCTCCATAAATAAGCATTTCAGGATGCACAAAGGGGTAGACAATAATTATATTGCCGAAGAATATAATTTTCAGACATCACAGAATTTCAGTTTAACACCAGAGTGGAAAACTCCAAAAAGTGGTGACAAATATACttgtaatgattgtaattaTACCACATTAATCAAAAGCTAtctaagaaaacattttaaaattcataaagggcctgagtataagtgtaaagaatgtaattataaaacagtgtggcaaagttgtctaaaggaacatgtcaaaattcatactggttacaaacataagtgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatatcaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaacagtatggcaaaagtgtctaaaggaacatgaaaaaattcatgcaggtattgaatataaatgtaaggaatgtgactataaaacagtacgaaaaaattccctaaaggaacatgtcaaagttcatacaggtgatgaatataaatgtaaagaatgtgcctataaaacagtgcgaaaaaattccctaaagcaacatgtcaaaatccatacaggtgatgaatacaagtgtaaagaatgtgattataaaacagtgtggccaagttatctaaaggaacatgtcaaaattcattcagATGACAaacataagtgtaaagattgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacaggtgacaaatatgggtgtgaaaaatgtgattataaaacaatatggcaaaagagtctaaaggaacatgaaaaaattcatgcaggtgttgaatataaatgcaaagaatgtgactataaaacagtgcgaaaaaattacctaaaaaaacatgtcaaagttcatacaggtgatgaatataaatgtaaagaatgtgactacaaaacagtgCAAGAAAATTCCTTaaagcaacatgttaaaattcatacaggtgatgaatataagtgtcaagaatgcaattataaaacagtgtggcaaagttGTCTgaaggaacatgttaaaattcatacaggatacaaatataaatgtatagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacaggtgacaaatataagtgtaaaaattgtgattataaaacagtatggcaaaagagtctaaagaaacatgaaaaaattcatgttggtgatgaatataaatataaagaatgtgactataaaacagtgacaaatgagtgtaaagaatgtgattataaaacagtatgggaaaggagtctaaaggaacatgtcaaaattcatacaggatACAAACATAAATGTATAgattgtgactataaaacagtaagaaaaaaTCGTCTagaggaacatgtcaaaattcatacaagtgacaaatataagtgtaaaaattgtgattataaaacagtatggcaaaAGAGTCTAAAGGAGCATGAAAAAATTCATgttggtgatgaatataaatataaagaatgtgattataaaacagtgacaaatgagtgtaaagaatgtgattataaaacagtatgggaaaggagtctaaaggaacatgtcaaaattcatacaggatACAAACATAAATGTATAgattgtgactataaaacagtgacaaatgagtgtaaagaatgtgattataaaacagtatgggaaaggagtctaaaggaacatgtcaaaattcatacaggatACAAACATAAATGTATAgattgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacaagtgacaaatataagtgtaaaaattgtgattataaaacagtatggcaaaAGAGTCTAAAGGAGCATGAAAAAATTCATgttggtgatgaatataaatataaagaatgtgattataaaacaTATAACTTAATGTCTACAATGGATGTTGATTCAATTGaaagttgtgcaataaaatctgaagtgatcTTAACGGAAACGTTTTCGTGTTGTGGACAATACAGAGATTCTGgggataaagaactaaaaacagAGCCAGTAGAATACgaagaaacttttaaatgtaaggaagaagATATTACTGTAGAGCTGACGGGCATATGTGCTGCTCCTGTACAACAATGTTCTATAAAAAAGCATTTCGGGATTCACAAAGGGGTGGATGATAAATATATTatagaagaatgtaattttcagACGAACCAGAATTTCTGTTCAACACCACAGTGGAAAACTTCAAAAAGTGGTGAAAAATAtacttgtaatgaatgtaattataccacattAATCCAAAGCTATCTAAgaagacatgttaaaattcataaaggggctgaatataagtgtaaagaatgtgactataaaacactgcGAAAAGATCGtataaaggaacatgtcaaaattcatacagctTACAaacatgagtgtaaagaatgtgactataaaacagtgcgaagagatcgtctaaagcaacatctcaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaacagtatggcaaaagtgtctaaaggaacatgaaaaaattcatgcaggtgttgaatataaatgtaaagaatgtgaatataaaacagtgcgaaaaaattccctaaaggaacatgtcaaaatccatacaggtgatgaatataaatgtaaagaatgtgactataaaacattgCAAGAAAGttatctaaagaaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggcaaaattgtctaaaggaacatgtcaaaattcatacaggtgataaatatgagtgtaaagaatgtgattacaaaacagtatggcaaaagtgtctaaaggaacatgaaaaaattcatgcaggtgttgaatataaatgtaaagaatgtgaatataaaacagtgcgaaaaaattccctaaaggaacatgtcaaagttcatacaggtgatgaatataaatgtaaagaatgtgactataaaacattgCAAGAAAGTTACCTAaagaaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaaattgtctaaaggaacatgtcaaaattcatacaggttatAAACATAAGTGTatagaatgtgactataaaacaatgCGAAAAGAtcgtctaaagcaacatgtcaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaacagtatggcaaaAGTGTCTTAAggaacatgaaaaaattcatgcaggtgttgaatataaatgtaaagaatgtgactataaaacagtgcgaaaaaattccctaaaggaacatgtcaaaatccatacaggtgatgaatataaatgtaaagaatgtgcactataa
Protein Sequence
MDFESKESGVIKSEVILTETFSFCEQYRDYGDKGLKTEPVDYEESFKCKEEDISVEHTGAVATLMQQFSCNRCDFVTMEKDSLIEHLKIMKNVQYFCNECNFTTQLQCSINKHFRMHKGVDNNYIAEEYNFQTSQNFSLTPEWKTPKSGDKYTCNDCNYTTLIKSYLRKHFKIHKGPEYKCKECNYKTVWQSCLKEHVKIHTGYKHKCKECDYKTVRKDRLKEHIKIHTGDKYECKECDYKTVWQKCLKEHEKIHAGIEYKCKECDYKTVRKNSLKEHVKVHTGDEYKCKECAYKTVRKNSLKQHVKIHTGDEYKCKECDYKTVWPSYLKEHVKIHSDDKHKCKDCDYKTVRKDRLKEHVKIHTGDKYGCEKCDYKTIWQKSLKEHEKIHAGVEYKCKECDYKTVRKNYLKKHVKVHTGDEYKCKECDYKTVQENSLKQHVKIHTGDEYKCQECNYKTVWQSCLKEHVKIHTGYKYKCIECDYKTVRKDRLKEHVKIHTGDKYKCKNCDYKTVWQKSLKKHEKIHVGDEYKYKECDYKTVTNECKECDYKTVWERSLKEHVKIHTGYKHKCIDCDYKTVRKNRLEEHVKIHTSDKYKCKNCDYKTVWQKSLKEHEKIHVGDEYKYKECDYKTVTNECKECDYKTVWERSLKEHVKIHTGYKHKCIDCDYKTVTNECKECDYKTVWERSLKEHVKIHTGYKHKCIDCDYKTVRKDRLKEHVKIHTSDKYKCKNCDYKTVWQKSLKEHEKIHVGDEYKYKECDYKTYNLMSTMDVDSIESCAIKSEVILTETFSCCGQYRDSGDKELKTEPVEYEETFKCKEEDITVELTGICAAPVQQCSIKKHFGIHKGVDDKYIIEECNFQTNQNFCSTPQWKTSKSGEKYTCNECNYTTLIQSYLRRHVKIHKGAEYKCKECDYKTLRKDRIKEHVKIHTAYKHECKECDYKTVRRDRLKQHLKIHTGDKYECKECDYKTVWQKCLKEHEKIHAGVEYKCKECEYKTVRKNSLKEHVKIHTGDEYKCKECDYKTLQESYLKKHVKIHTGDEYKCKECDYKTVWQNCLKEHVKIHTGDKYECKECDYKTVWQKCLKEHEKIHAGVEYKCKECEYKTVRKNSLKEHVKVHTGDEYKCKECDYKTLQESYLKKHVKIHTGDEYKCKECDYKTVWQNCLKEHVKIHTGYKHKCIECDYKTMRKDRLKQHVKIHTGDKYECKECDYKTVWQKCLKEHEKIHAGVEYKCKECDYKTVRKNSLKEHVKIHTGDEYKCKECAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-