Lyun011476.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2325256-2327535[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.33 4.7 8.0 0.2 1 21 68 88 68 89 0.94
2 21 0.98 14 6.5 4.4 1 23 95 117 95 117 0.96
3 21 0.00046 0.0065 17.0 2.4 1 23 165 187 165 187 0.99
4 21 0.026 0.37 11.4 0.3 1 23 192 214 192 214 0.96
5 21 0.0008 0.011 16.2 6.2 1 23 219 241 219 241 0.99
6 21 1.1 15 6.4 0.7 1 23 246 268 246 268 0.95
7 21 0.081 1.1 9.9 0.7 1 23 273 295 273 295 0.97
8 21 0.00039 0.0056 17.2 6.1 1 23 327 349 327 349 0.99
9 21 1.1 15 6.4 0.7 1 23 354 376 354 376 0.95
10 21 0.081 1.1 9.9 0.7 1 23 381 403 381 403 0.97
11 21 9.5e-05 0.0013 19.1 1.9 1 23 435 457 435 457 0.99
12 21 0.024 0.34 11.6 0.4 1 23 462 484 462 484 0.98
13 21 0.0061 0.086 13.5 0.6 1 23 489 511 489 511 0.98
14 21 0.032 0.45 11.2 0.7 1 23 516 538 516 538 0.98
15 21 0.00016 0.0022 18.5 1.3 1 23 543 565 543 565 0.98
16 21 0.0082 0.12 13.0 0.9 1 23 570 592 570 592 0.98
17 21 0.036 0.51 11.0 1.3 1 23 597 619 597 619 0.98
18 21 0.00029 0.0041 17.6 3.2 1 23 624 646 624 646 0.98
19 21 0.32 4.6 8.0 1.2 1 23 651 673 651 673 0.97
20 21 0.0024 0.034 14.7 1.4 1 23 678 700 678 700 0.99
21 21 0.00096 0.014 16.0 2.1 1 23 705 727 705 727 0.99

Sequence Information

Coding Sequence
atggatgttgattctattgaaaattgtacaataaaatctgaagtgcTTTTAACAGAAACGTTTTCGTTTTGTGGACAATACAGAGGTTATGGGtataaagaactaaaaacagAGCCAGTAGATTTTGAAGAATCTAttaaatgtaaggaagaagGTATTTCTGTAGAGCAGACGGACATGCATACTGCTCCgttgcaacaatttttttgtaaagagtgtgattttatgacaatggaaaaagattctctaatagaacacttgaaaattattaaaaatgttcaatattcttGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTCTCTAAAAAGGCATTTCGAGGTTCACAAAGGGACATCTCAGAATTTCTCTATAACACAACAGTGGAAAACTCCAATAAGTGgtgacaaatatatttgtaatgaatttaattatagcacaTGCAAAAGCTATCTAAGAAGGCATGTTACAATTCATAAAGGggctgaatataagtgtaaagaatgtgactatcaaacagtgcgaaaagatcgTCTAAAGCAACACGTCAAAACTCATACTagtgacaaatatgagtgtatagaatgtgattttaaaacagcacggcaaggtagtctaaagcaacatgtcaaaattcatacaggtgatgaatacaaatgtaaccaatgtgactataaaacagtgcgaaaagatcatCTAAATCACCATGTGAAAagtcatacaggtgataaatacaagtgtaaagaatgtgattttcaAACAGCATGGCAAaatcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtatagaatgtgagtataaaacagtgcgaaaagatcgTCTAAAGGATCATGTCagaattcacacaggtgatgaacataaatgtatagaatgtgattataaaacaatatggaaatatCTTCTaatggaacatgtcaaaattcatacaggtgatgaatacaaatgtaaagaatgtgactataaaacagtgcgaaaagatcatCTAAATCACCATGTGAAAagtcatacaggtgataaatacaagtgtaaagaatgtgattttcaAACAGCATGGCAAaatcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtatagaatgtgagtataaaacagtgcgaaaagatcgTCTAAAGGATCATGTCagaattcacacaggtgatgaacataaatgtatagaatgtgattataaaacaatatggaaatatCTTCTaatggaacatgtcaaaattcatacaggtgatgaatacaaatgtaaagaatgtgactataaaacagtgcgaaaagatcgTTTAAGGgaacacatgaaaattcatacaggtgataaatataagtgtaaagaatgtgattttgaaacagcatggcaaagtagtctaaaggaacatgtcaaaattcatagatgtgacaaatataagtgtaaagaatgtgattacaaaacagcatggcaaagtagtctaaaggaacatgtcaaaattcatacagatgatgaatataagtgcaaagaatgtaattataaaacagcatggcaaagTAGTCTGAAGggtcatgtcaaaattcacacaggtgatgaatataaatgtatagaatgtgactataaaacagtgcgaaaaagtaatctaaatcaacatatgaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcgtggaaaagtagtctaaagctacatgtcaaaattcatgcaggtgacaaatatgagtgtaaagaatgtgattataaaacagcatggcaaagTTGTCTAAATgaacatcttaaaattcatacaggtgataaacataagtgtaatgaatgcgaCTATAAAACGGTgagaaaaagttatttaaatcaacatgtgaaaattcatacaggtgatgaatataagtgcaaagagtgcgattataaaacaatatggaaaaatcgtttgaaggaacatgtcaaaattcatatgggtactgaatataaatgtaaagaatgtgtctataaaacagtgcgaaaagatcgTTTAAAGGaacacattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagttCTCTGAAGAAACATATCAAAAGACACTGGTGA
Protein Sequence
MDVDSIENCTIKSEVLLTETFSFCGQYRGYGYKELKTEPVDFEESIKCKEEGISVEQTDMHTAPLQQFFCKECDFMTMEKDSLIEHLKIIKNVQYSCKECNFTTQLQCSLKRHFEVHKGTSQNFSITQQWKTPISGDKYICNEFNYSTCKSYLRRHVTIHKGAEYKCKECDYQTVRKDRLKQHVKTHTSDKYECIECDFKTARQGSLKQHVKIHTGDEYKCNQCDYKTVRKDHLNHHVKSHTGDKYKCKECDFQTAWQNRLKEHVKIHTGDEYKCIECEYKTVRKDRLKDHVRIHTGDEHKCIECDYKTIWKYLLMEHVKIHTGDEYKCKECDYKTVRKDHLNHHVKSHTGDKYKCKECDFQTAWQNRLKEHVKIHTGDEYKCIECEYKTVRKDRLKDHVRIHTGDEHKCIECDYKTIWKYLLMEHVKIHTGDEYKCKECDYKTVRKDRLREHMKIHTGDKYKCKECDFETAWQSSLKEHVKIHRCDKYKCKECDYKTAWQSSLKEHVKIHTDDEYKCKECNYKTAWQSSLKGHVKIHTGDEYKCIECDYKTVRKSNLNQHMKIHTGDEYKCKECDYKTAWKSSLKLHVKIHAGDKYECKECDYKTAWQSCLNEHLKIHTGDKHKCNECDYKTVRKSYLNQHVKIHTGDEYKCKECDYKTIWKNRLKEHVKIHMGTEYKCKECVYKTVRKDRLKEHIKIHTGDEYKCKECDYKTVWQSSLKKHIKRHW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-