Lyun000455.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1956379-1959625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0032 0.045 14.3 1.3 1 23 146 168 146 168 0.98 2 32 0.073 1 10.0 0.2 3 23 175 195 173 195 0.97 3 32 0.15 2.1 9.1 2.8 2 23 201 222 200 222 0.97 4 32 0.024 0.33 11.6 0.7 2 23 228 249 227 249 0.97 5 32 0.085 1.2 9.9 2.2 2 23 255 276 254 276 0.96 6 32 0.097 1.4 9.7 0.6 2 23 282 303 281 303 0.97 7 32 0.052 0.73 10.5 3.3 2 23 309 330 308 330 0.97 8 32 0.12 1.7 9.4 2.8 2 23 336 357 335 357 0.97 9 32 0.29 4.1 8.2 2.7 2 23 363 384 362 384 0.97 10 32 0.066 0.94 10.2 1.6 2 23 390 411 389 411 0.97 11 32 0.052 0.74 10.5 2.8 2 23 417 438 416 438 0.97 12 32 0.14 2 9.1 2.9 2 23 444 465 443 465 0.97 13 32 0.032 0.46 11.2 0.8 2 23 471 492 470 492 0.97 14 32 0.052 0.73 10.5 3.3 2 23 498 519 497 519 0.97 15 32 0.052 0.74 10.5 2.8 2 23 525 546 524 546 0.97 16 32 0.024 0.33 11.6 0.7 2 23 552 573 551 573 0.97 17 32 0.085 1.2 9.9 2.2 2 23 579 600 578 600 0.96 18 32 0.097 1.4 9.7 0.6 2 23 606 627 605 627 0.97 19 32 0.052 0.73 10.5 3.3 2 23 633 654 632 654 0.97 20 32 0.12 1.7 9.4 2.8 2 23 660 681 659 681 0.97 21 32 0.29 4.1 8.2 2.7 2 23 687 708 686 708 0.97 22 32 0.023 0.32 11.6 0.7 2 23 714 735 713 735 0.97 23 32 0.052 0.73 10.5 3.3 2 23 741 762 740 762 0.97 24 32 0.052 0.74 10.5 2.8 2 23 768 789 767 789 0.97 25 32 0.097 1.4 9.7 0.6 2 23 795 816 794 816 0.97 26 32 0.052 0.73 10.5 3.3 2 23 822 843 821 843 0.97 27 32 0.14 2 9.1 2.9 2 23 849 870 848 870 0.97 28 32 0.052 0.74 10.5 2.8 2 23 876 897 875 897 0.97 29 32 0.14 2 9.1 2.9 2 23 903 924 902 924 0.97 30 32 0.032 0.46 11.2 0.8 2 23 930 951 929 951 0.97 31 32 6.4e-05 0.00091 19.7 0.5 2 23 957 978 956 978 0.97 32 32 0.026 0.37 11.5 4.1 1 23 983 1005 983 1005 0.98
Sequence Information
- Coding Sequence
- ATGGACGTTCATTGCAATGAAAGTTGttcaataaaatctgaagtgactctaacagagacattttctttttgtggagaaTTCAGAGATTATGTGAAGAAAGAATTGAAGTCTGAGCCAGTAAATCttgaagaatcttttaaatgcaaGGAAGAAGAAAACCTTGCAGAGCATATGGATATATCTACTGATCCTGTACAGCAATATACTTTTAATGATTGTAACTTTAGAACAACGGAAAAGGATTGTCTAGTAAAACATCAGGAATGTACTAATAACATTCAACATttgtgtaaggaatgtaactttaaaactgTATTGGAATGTTCCATGAATGAACATTTAAGAACTCATCATAGAGTAAATACTATATGTAATTTGAAGACATCTCAAATTATCTCTGTAACACAATTGAAAAGTGGCGAACATGGTGGTTACTACATTTGTAACCAGTGTGGTTTTAAAACACAATCAAAATATAgcttaaaaatacatataaataatcataCAGGTAATAAGTACGGGTGtgaggaatgtgattttaaaacagtgtggaaatcaAATCTTAACAgtcatattaaaattcataccagtgatgaattgaagtgtaaagaatgtgactataaaactgtatggaaatgTAGTCTTAAcaatcatatgaaaattcataccagtgataaattgaaatgtaaggaatgtgactacaaaactccttGGAAACGATTATTGAAAGatcatatgagaattcatacaggtgatgaattgatgtgtaaagaatgtgactataaaactgtatggaaatgTAATCTTAAcaatcatatgaaaattcacaccagtaataaattgaagtgtaaggaatgtgactacaaaactccttGGGAACGATTATTAAAAaaccatatgaaaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtatggaaatgtaatcttaaaaatcatatgaaaattcacaccaGTGATAAGttgaaatgtaaagaatgtgacttcAGAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgatgaattgaagtgtaaagaatgtgactataaaactatATGGAGATGTAGTCTTAAcaatcatatgaaaattcataccagTGATAAATTGAAGTGTAAGAAATGTAACTACAAAACTCCTTGGAAACGATTATTAAAagaacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtgtggaaatGTAATCTTAAcaatcatatgaaaattcacaccgGTGATATgttgaagtgtaaagaatgtgacttcAAAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtatggaaatcTAATATTAAcaatcatatgaaaattcataccagtgataaattgaagtgtaaagaatgtgactataaaactgtatggaaatgtaatcttaaaaatcatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgactataaaactgtatggaaatgTAATCTTAAcaatcatatgaaaattcataccagtgataaattgaagtgtaaggaatgtgactacaaaactccttGGAAACGATTATTGAAAGatcatatgagaattcatacaggtgatgaattgatgtgtaaagaatgtgactataaaactgtatggaaatgTAATCTTAAcaatcatatgaaaattcacaccagtaataaattgaagtgtaaggaatgtgactacaaaactccttGGGAACGATTATTAAAAaaccatatgaaaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtatggaaatgtaatcttaaaaatcatatgaaaattcacaccaGTGATAAGttgaaatgtaaagaatgtgacttcAGAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgatgaattgaagtgtaaagaatgtgactataaaactatATGGAGATGTAGTCTTAAcaatcatatgaaaattcataccagtgataaattgaaatgtaaggaatgtgactacaaaactccttGGAAACGATTATTAAAagaacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtatggaaatgtaatcttaaaaatcatatgaaaattcacaccgGTGATATgttgaagtgtaaagaatgtgactataaaactgtatggaaatgTAATCTTAAcaatcatatgaaaattcacaccagtaataaattgaagtgtaaggaatgtgactacaaaactccttGGGAACGATTATTAAAAaaccatatgaaaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtatggaaatgtaatcttaaaaatcatatgaaaattcacaccaGTGATAAGttgaaatgtaaagaatgtgacttcAAAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgatgaattgaaatgtaaagaatgtgactataaaactgtgtggaaatGTAATCTTAAcaatcatatgaaaattcacaccgGTGATATgttgaagtgtaaagaatgtgacttcAAAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgacgaattgaaatgtaaagaatgtgactataaaactgtatggaaatcTAATATTAAcaatcatatgaaaattcataccagtgataaattgaagtgtaaggaatgtgactacaaaactagTAGGAATTGGGCTCTTACagcacatatgaaaattcatacagttgatgaatttaagtgtatGAAATGCGACTATAAAGCTGTGTTCAAATGTAATCTTAAcaatcatatgaaaattcatatgaCTGATAAGTTGTAG
- Protein Sequence
- MDVHCNESCSIKSEVTLTETFSFCGEFRDYVKKELKSEPVNLEESFKCKEEENLAEHMDISTDPVQQYTFNDCNFRTTEKDCLVKHQECTNNIQHLCKECNFKTVLECSMNEHLRTHHRVNTICNLKTSQIISVTQLKSGEHGGYYICNQCGFKTQSKYSLKIHINNHTGNKYGCEECDFKTVWKSNLNSHIKIHTSDELKCKECDYKTVWKCSLNNHMKIHTSDKLKCKECDYKTPWKRLLKDHMRIHTGDELMCKECDYKTVWKCNLNNHMKIHTSNKLKCKECDYKTPWERLLKNHMKIHTGDELKCKECDYKTVWKCNLKNHMKIHTSDKLKCKECDFRTPRKCILKEHMRIHTGDELKCKECDYKTIWRCSLNNHMKIHTSDKLKCKKCNYKTPWKRLLKEHMRIHTGDELKCKECDYKTVWKCNLNNHMKIHTGDMLKCKECDFKTPRKCILKEHMRIHTGDELKCKECDYKTVWKSNINNHMKIHTSDKLKCKECDYKTVWKCNLKNHMKIHTGDELKCKECDYKTVWKCNLNNHMKIHTSDKLKCKECDYKTPWKRLLKDHMRIHTGDELMCKECDYKTVWKCNLNNHMKIHTSNKLKCKECDYKTPWERLLKNHMKIHTGDELKCKECDYKTVWKCNLKNHMKIHTSDKLKCKECDFRTPRKCILKEHMRIHTGDELKCKECDYKTIWRCSLNNHMKIHTSDKLKCKECDYKTPWKRLLKEHMRIHTGDELKCKECDYKTVWKCNLKNHMKIHTGDMLKCKECDYKTVWKCNLNNHMKIHTSNKLKCKECDYKTPWERLLKNHMKIHTGDELKCKECDYKTVWKCNLKNHMKIHTSDKLKCKECDFKTPRKCILKEHMRIHTGDELKCKECDYKTVWKCNLNNHMKIHTGDMLKCKECDFKTPRKCILKEHMRIHTGDELKCKECDYKTVWKSNINNHMKIHTSDKLKCKECDYKTSRNWALTAHMKIHTVDEFKCMKCDYKAVFKCNLNNHMKIHMTDKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -