Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002186.1:1727596-1730201[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.16 2.2 9.0 0.5 1 23 68 90 68 90 0.98

2 26 0.21 3 8.6 4.3 1 23 122 144 122 144 0.98

3 26 0.018 0.25 12.0 2.1 1 23 149 171 149 171 0.97

4 26 0.0047 0.066 13.8 0.9 1 23 176 198 176 198 0.99

5 26 0.0055 0.078 13.6 3.2 1 23 203 225 203 225 0.98

6 26 0.044 0.62 10.8 0.4 1 23 230 252 230 252 0.98

7 26 0.21 3 8.6 4.3 1 23 284 306 284 306 0.98

8 26 0.006 0.084 13.5 2.6 1 23 311 333 311 333 0.98

9 26 0.0066 0.094 13.3 0.7 1 23 338 360 338 360 0.99

10 26 0.0053 0.074 13.6 2.7 1 23 365 387 365 387 0.98

11 26 0.023 0.32 11.7 0.8 1 23 392 414 392 414 0.98

12 26 0.053 0.76 10.5 6.0 1 23 419 441 419 441 0.97

13 26 0.21 3 8.6 4.3 1 23 446 468 446 468 0.98

14 26 0.006 0.084 13.5 2.6 1 23 473 495 473 495 0.98

15 26 0.0066 0.094 13.3 0.7 1 23 500 522 500 522 0.99

16 26 0.0053 0.074 13.6 2.7 1 23 527 549 527 549 0.98

17 26 0.023 0.32 11.7 0.8 1 23 554 576 554 576 0.98

18 26 0.035 0.5 11.0 2.1 1 23 581 603 581 603 0.97

19 26 0.93 13 6.6 0.4 1 20 608 627 608 628 0.94

20 26 0.006 0.084 13.5 2.6 1 23 631 653 631 653 0.98

21 26 0.21 3 8.6 4.3 1 23 658 680 658 680 0.98

22 26 0.014 0.19 12.3 2.8 1 23 685 707 685 707 0.96

23 26 0.023 0.32 11.7 0.8 1 23 712 734 712 734 0.98

24 26 0.035 0.5 11.0 2.1 1 23 739 761 739 761 0.97

25 26 0.033 0.47 11.1 1.5 1 23 766 788 766 788 0.98

26 26 0.0089 0.13 12.9 3.0 1 23 793 815 793 815 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.16	2.2	9.0	0.5	1	23	68	90	68	90	0.98
2	26	0.21	3	8.6	4.3	1	23	122	144	122	144	0.98
3	26	0.018	0.25	12.0	2.1	1	23	149	171	149	171	0.97
4	26	0.0047	0.066	13.8	0.9	1	23	176	198	176	198	0.99
5	26	0.0055	0.078	13.6	3.2	1	23	203	225	203	225	0.98
6	26	0.044	0.62	10.8	0.4	1	23	230	252	230	252	0.98
7	26	0.21	3	8.6	4.3	1	23	284	306	284	306	0.98
8	26	0.006	0.084	13.5	2.6	1	23	311	333	311	333	0.98
9	26	0.0066	0.094	13.3	0.7	1	23	338	360	338	360	0.99
10	26	0.0053	0.074	13.6	2.7	1	23	365	387	365	387	0.98
11	26	0.023	0.32	11.7	0.8	1	23	392	414	392	414	0.98
12	26	0.053	0.76	10.5	6.0	1	23	419	441	419	441	0.97
13	26	0.21	3	8.6	4.3	1	23	446	468	446	468	0.98
14	26	0.006	0.084	13.5	2.6	1	23	473	495	473	495	0.98
15	26	0.0066	0.094	13.3	0.7	1	23	500	522	500	522	0.99
16	26	0.0053	0.074	13.6	2.7	1	23	527	549	527	549	0.98
17	26	0.023	0.32	11.7	0.8	1	23	554	576	554	576	0.98
18	26	0.035	0.5	11.0	2.1	1	23	581	603	581	603	0.97
19	26	0.93	13	6.6	0.4	1	20	608	627	608	628	0.94
20	26	0.006	0.084	13.5	2.6	1	23	631	653	631	653	0.98
21	26	0.21	3	8.6	4.3	1	23	658	680	658	680	0.98
22	26	0.014	0.19	12.3	2.8	1	23	685	707	685	707	0.96
23	26	0.023	0.32	11.7	0.8	1	23	712	734	712	734	0.98
24	26	0.035	0.5	11.0	2.1	1	23	739	761	739	761	0.97
25	26	0.033	0.47	11.1	1.5	1	23	766	788	766	788	0.98
26	26	0.0089	0.13	12.9	3.0	1	23	793	815	793	815	0.98

Sequence Information

Coding Sequence: atggatATTGATTATAATGAAAGTTACCCGTTGAAATCAGATGTAACTCTACAGGAAACATTTTCGTATTGCGGAAATTATAAAGATGATGGGAATGGAGAATTGAAAACAAACCTGATAAAGATAGAAAAACCTTTTAAATATGAAGAAGACAATAATCTGGGAGAGCTGGGCGATGTATGTGCTATACCCATACATCAATATagttgtaatgaatgtgattataaaacaccatggaaacagagtctaaagggacatttaaaaattcatactggtgatgaacaTAAGTGTCAGGAATGCGATTTTAAAACGCTATGGAAACACAATCTAaagatacatttaaaaattcatactggtgatgaacataagtgtaaggagtgtgattataaaacgccaTGGAAGAATCacctaaaggaacatttaaaaattcatagtggCGAAGAATATAAttgcaaggaatgtgattataaaacactaaggaaaaattatctaaagcaacatatgttaattcatactggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaaggtACATTTAAAAGTTCATAGTAGcgaaaaatataagtgtaaggaatgtgattataaaactttaaGGAAAACttatctaaagcaacatatGTTAATgcatactggtgaagaatataagtgtgaagaatgtgattataaaacaccatggagaAATAATCTAAAgggtcatttaaaaattcatactggtgatgaacataagtgtaaggaatgcgatTTTAAAACACTATGGAAACACAATCTAaagatacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacgccaTGGAAAAATCacctaaaggaacatttaaaaattcatagtggcgaagaatataagtgcaaggaatgtgattataaaacactaaggaaaaattatctaaagcaacatatGTTAATTCATACCggcgaagaatataagtgtaaagaatgtgattataaaacgccaTGGAACAATAATCTAaaggtacatttaaaaattcatagtggcgaaaaatataagtgtaaggaatgcgattataaaacactaaGGAAAACttatctaaagcaacatatgttaattcatactggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaagggacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacactaagGAAACACAATCTAaagatacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacgccaTGGAAAAATCacctaaaggaacatttaaaaattcatagtggcgaagaatataagtgcaaggaatgtgattataaaacactaaggaaaaattatctaaagcaacatatGTTAATTCATACCggcgaagaatataagtgtaaagaatgtgattataaaacgccaTGGAACAATAATCTAaaggtacatttaaaaattcatagtggcgaaaaatataagtgtaaggaatgcgattataaaacactaaGGAAAACttatctaaagcaacatatgttaattcatactggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaagggacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacactaagGGAAgattatctaaaggaacatatgttaattcatactggtgatgaacataggtgtaaggaatgtgattataaaacaccatggagaaataatctaaaggaacatattggcgaagaatataagtgcaaggaatgtgattataaaacactaaggaaaaattatctaaagcaacatatgttaattcatactggtgatgaacataagtgtaaagaatgtgattataaaacgccaTGGAAAAATCacctaaaggaacatttaaaaattcatagtggcgaaaaatataagtgtaaggaatgcgatTTTAAAACACTAAGGAAAACttatctaaagcaacatatgttaattcatactggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaagggacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacactaagGGAAgattatctaaaggaacatatgttaattcatactggtgatgaacataggtgtaaggaatgtgattataaaacaccatggagaaataatctaaaggaacatatgttagttcatactggtgatgaacataagtgtaaggaatgtggttataaaacaccatggaaacaaaatctaaagaaacatttaaaaattcatactggcgaaGAATAttag
Protein Sequence: MDIDYNESYPLKSDVTLQETFSYCGNYKDDGNGELKTNLIKIEKPFKYEEDNNLGELGDVCAIPIHQYSCNECDYKTPWKQSLKGHLKIHTGDEHKCQECDFKTLWKHNLKIHLKIHTGDEHKCKECDYKTPWKNHLKEHLKIHSGEEYNCKECDYKTLRKNYLKQHMLIHTGEEYKCKECDYKTPWKNNLKVHLKVHSSEKYKCKECDYKTLRKTYLKQHMLMHTGEEYKCEECDYKTPWRNNLKGHLKIHTGDEHKCKECDFKTLWKHNLKIHLKIHTGDEHKCKECDYKTPWKNHLKEHLKIHSGEEYKCKECDYKTLRKNYLKQHMLIHTGEEYKCKECDYKTPWNNNLKVHLKIHSGEKYKCKECDYKTLRKTYLKQHMLIHTGEEYKCKECDYKTPWKNNLKGHLKIHTGDEHKCKECDYKTLRKHNLKIHLKIHTGDEHKCKECDYKTPWKNHLKEHLKIHSGEEYKCKECDYKTLRKNYLKQHMLIHTGEEYKCKECDYKTPWNNNLKVHLKIHSGEKYKCKECDYKTLRKTYLKQHMLIHTGEEYKCKECDYKTPWKNNLKGHLKIHTGDEHKCKECDYKTLREDYLKEHMLIHTGDEHRCKECDYKTPWRNNLKEHIGEEYKCKECDYKTLRKNYLKQHMLIHTGDEHKCKECDYKTPWKNHLKEHLKIHSGEKYKCKECDFKTLRKTYLKQHMLIHTGEEYKCKECDYKTPWKNNLKGHLKIHTGDEHKCKECDYKTLREDYLKEHMLIHTGDEHRCKECDYKTPWRNNLKEHMLVHTGDEHKCKECGYKTPWKQNLKKHLKIHTGEEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -