Lyun002316.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000335.1:12735613-12737334[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0023 0.033 14.8 2.4 1 23 143 165 143 165 0.98
2 15 7.4e-05 0.0011 19.5 2.7 1 23 175 197 175 197 0.99
3 15 0.0027 0.038 14.6 1.2 1 23 202 224 202 224 0.99
4 15 0.0017 0.024 15.2 0.9 1 23 229 251 229 251 0.99
5 15 0.0013 0.019 15.5 3.1 1 23 256 278 256 278 0.97
6 15 0.0044 0.062 13.9 3.8 1 23 283 305 283 305 0.96
7 15 0.0016 0.022 15.3 1.7 1 23 310 332 310 332 0.99
8 15 0.036 0.51 11.0 0.8 1 23 337 359 337 359 0.98
9 15 0.0011 0.015 15.8 1.9 1 23 364 386 364 386 0.99
10 15 0.0019 0.027 15.0 0.8 1 23 391 413 391 413 0.98
11 15 0.0016 0.022 15.3 1.7 1 23 418 440 418 440 0.99
12 15 0.0016 0.022 15.3 1.7 1 23 445 467 445 467 0.99
13 15 0.00063 0.0089 16.5 0.8 1 23 472 494 472 494 0.99
14 15 0.036 0.5 11.0 1.3 1 23 499 521 499 521 0.98
15 15 0.00037 0.0052 17.3 1.0 1 23 526 548 526 548 0.99

Sequence Information

Coding Sequence
atggatGTTGATTCAATAGCAAATAGTGCAATAAAGTccgaagtgattttaacagaaacatttgcGTTTActggaaaatatgaagattgtaGCGAGAGTCAAGAACCTAAAACAGAACCAGCAGTTTATGaagaattgtttaaatgtaaaaaagaagATTCTGTAGAGCACATAGGCATACATGCTGCTTCGacacaaattattaatgaatgtaattttacaacaatGGAAAAGGATTATCCAATTGAAcacttgaaaattattaaaaatgttcaatattctaGTGAGGAATGTAACTTTATAACACAGTTAGAATCTTCCGTAAAAGAGAATTTCAAAATTCACAATGGAATAGATGATCAATATATTACTGaagaatgtagttttaaaaTGCCAGAGCTCAAAACTGCAAGAATTCGCAATGAAtatgtttgtaatgaatgtactTATACCACATTCGTCAAATGTAATCTATGgagacatataaaaattcataaaggtgatGACTATACCTGTGAcatatataagtgtaaagaatgtgactatacaACAAAGCGGAAAAATTacctaaaggaacatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtaattataaaacagtgtggaaaagtagtctaaaggaacacatcaaaattcatacaggtgataaatataagtgtaaagaatgtgactataagacagtatggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaatcaAAGCGAAAAATtcaactaaaggaacacgtcaaatttcatacaggtgatgaatgtaagtgtaaagaatgtgactataaagcAAAGCGAAAAAATCAactaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtgcagAAAAATcgactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatctactaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacagcaAAATAgactaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtaatctaacggaacatgttaaaattcatacaggtgatttatataagtgtaaagaatgtgattataaaacagtgcagaaaaatcgactaaaggaacatgtcaaaattcatacgggtgatgaatataagtgtaaagaatgtgattacaaaacagtacagaaaaatagactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactatagaacagtatggaaaagtaatctaaaggagCATGTccgaattcatactggtgatgaatataagtgtaaagaatgtaattataaaactgtttgGAAAAATCTACTAAAGGAACatctaaaaattcatacaggtgatcaatataagtgtaaagaatgtgattataaagcaaTACGGAAAAAGCAACTAaatgaacatgtcaaaattcatacaagtgatgAACACAAGCaatga
Protein Sequence
MDVDSIANSAIKSEVILTETFAFTGKYEDCSESQEPKTEPAVYEELFKCKKEDSVEHIGIHAASTQIINECNFTTMEKDYPIEHLKIIKNVQYSSEECNFITQLESSVKENFKIHNGIDDQYITEECSFKMPELKTARIRNEYVCNECTYTTFVKCNLWRHIKIHKGDDYTCDIYKCKECDYTTKRKNYLKEHVKIHTGDEYKCKECNYKTVWKSSLKEHIKIHTGDKYKCKECDYKTVWKSNLKEHVKIHTGDEYKCKECDYKSKRKIQLKEHVKFHTGDECKCKECDYKAKRKNQLKEHVKIHTGDEYKCKECDYKTVQKNRLKEHVKIHTGDEYKCKECDYKTVWKNLLKEHVKIHTGDEYKCKECDYKTVQQNRLKQHVKIHTGDEYKCKECDYKTVWKSNLTEHVKIHTGDLYKCKECDYKTVQKNRLKEHVKIHTGDEYKCKECDYKTVQKNRLKEHVKIHTGDEYKCKECDYRTVWKSNLKEHVRIHTGDEYKCKECNYKTVWKNLLKEHLKIHTGDQYKCKECDYKAIRKKQLNEHVKIHTSDEHKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-