Lyun016038.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002219.1:71768-73735[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0013 0.019 15.5 0.2 1 21 74 94 74 95 0.96
2 17 0.033 0.47 11.1 2.1 1 23 173 195 173 195 0.98
3 17 0.022 0.31 11.7 0.6 1 23 200 222 200 222 0.98
4 17 0.0034 0.048 14.3 2.2 1 23 254 276 254 276 0.99
5 17 4.2e-05 0.00059 20.3 2.7 1 23 281 303 281 303 0.99
6 17 0.028 0.4 11.3 0.8 1 23 308 330 308 330 0.99
7 17 4.3e-05 0.00061 20.2 0.4 1 23 335 357 335 357 0.98
8 17 9.2e-05 0.0013 19.2 2.8 1 23 362 384 362 384 0.99
9 17 1.3 19 6.1 3.5 1 23 389 411 389 411 0.95
10 17 0.0086 0.12 13.0 2.8 1 23 416 438 416 438 0.99
11 17 0.11 1.5 9.5 1.9 1 23 443 465 443 465 0.97
12 17 0.00069 0.0097 16.4 1.9 1 23 470 492 470 492 0.99
13 17 0.00011 0.0015 18.9 0.3 1 23 497 519 497 519 0.98
14 17 1.4e-05 0.0002 21.7 1.8 1 23 524 546 524 546 0.99
15 17 0.054 0.77 10.5 3.0 1 23 551 573 551 573 0.99
16 17 0.00014 0.002 18.6 3.8 1 23 578 600 578 600 0.99
17 17 0.064 0.9 10.2 2.0 1 23 605 628 605 628 0.97

Sequence Information

Coding Sequence
ATGGATGTTTGTTCCAATGAAAGTTGCCCCATAAAATCGGAAGTTGTTATTAACGAGACATTTTCAGTTGGTGGAAAATACGAAGATTATGCTCGTGAACAGTTTAAATTGGACATGGTGGATTATGAAAGTGAAGACTTAAAATCAGAACCGATAGATTTCAAAGAACCATTCGGATGCAAGGAAGAAGATAATTTTGTACCTGTTACTCCCACACAATACACTTGTAATGAATGCAACGTTATGACAACAGACAAAGATACTTTAaaagaacatttgaaaattaccaaaaatgttcaatatttttgtaaggaatgtaactttaaaacctGGCTGGAATGTTCAATGAAAGAACATTTGAGGATTCACAATAAAATGGACGGTACatacatttctaaaaaatttaattctaactCGCCACAGTCAAAAACTGCGAAAACTTGCAATGaatatgattataaaacacagtacAAATGTTATCTAAAATCACATATGGAAATTAATATGCCTGTTGAATATAAATGtcaggaatgtgattttaaaacaaaatggcaacagagtctaaagaaacatgtcaaaattcatagtggtgatgaatataagtgtagggaatgtgattacaaaacgccatggaaacagaatctagaAAGTCATATGACAATTCATAGTGGTagtgaatataaatgtaagaaatgtgattttaaaacactatggaaacaaagtctaaaatatcatgtgaaaattcatgctagtgatgaatataaatgtaacaaatgtgactataaaactgtgtggaaataTTCTCTAACtacacatatgaaaattcattcgggtgatgaatataagtgcaaagaatgtgattataaaacagtgcggaaaactTATCTAACAAGTCATATGaagattcatactggtgatgaatataagtgcaatgaATGTGACTTCAAAACGGGATGGAAAAATTCTCTAGAAACACATATGAAGATTCATAAAGGTGAtctatataaatgtaaggaatgtgactataaagcAGCACAAAAAGGTAATCTAAAAATTCACATGAGTATTCATACAGGAGAAAAATATAAGTGTTcaaaatgtgactataaaacagtgcggaaattttctctaaaaattcatATGAAGATTCattctggtgatgaatataagtgcaaagaatgtgattataaaacactgtgggAAAGTTATCTAACAACTCATATGAAGATTCattcaggtgatgaatataagtgcaacaAATGTAACTACAAAACAACGTGgaaaaatttgctacaaacaCATATGAAGATTCattcaggtgatgaatataagtgcaaagaatgtgattataaaacactgtggaaaaGTTATCTAACAAGTCATATGaagattcatacaggtgatgaatataagtgcaacgAATGTGACTACAGAACAACATGGAAATATTCACTACaaacacatatgaaaattcataaaggtgatctatataaatgtaaggaatgtgactataaagcAGCAcaaaaaggtaatttaaaaattcacatggGTAGTCATACAGGAGAAAAATATAAGTGTtcggaatgtgactataaaacagtgcggaaatatTCTCTAAAAATACATATGaagattcatactggtgatgaatataagtgttcAGAATGTGAATATAAATCGATATGGAAACATTCTCTAAAAACACATATGAAGATTCATttaggtgataaatataagtgcaaagaatgtgattatgaaacagTGCAGAAAACTTGTCTAACACGTCATATGAAGATTCATAGGGgttatgaatataagtgcaacgAATGTGACTACAAGACGACATGGAAACACTCTCTAGGAACGCACATTATGAAGATTCATAAAGGTGATCTGTATAAATGTAAGAAATGA
Protein Sequence
MDVCSNESCPIKSEVVINETFSVGGKYEDYAREQFKLDMVDYESEDLKSEPIDFKEPFGCKEEDNFVPVTPTQYTCNECNVMTTDKDTLKEHLKITKNVQYFCKECNFKTWLECSMKEHLRIHNKMDGTYISKKFNSNSPQSKTAKTCNEYDYKTQYKCYLKSHMEINMPVEYKCQECDFKTKWQQSLKKHVKIHSGDEYKCRECDYKTPWKQNLESHMTIHSGSEYKCKKCDFKTLWKQSLKYHVKIHASDEYKCNKCDYKTVWKYSLTTHMKIHSGDEYKCKECDYKTVRKTYLTSHMKIHTGDEYKCNECDFKTGWKNSLETHMKIHKGDLYKCKECDYKAAQKGNLKIHMSIHTGEKYKCSKCDYKTVRKFSLKIHMKIHSGDEYKCKECDYKTLWESYLTTHMKIHSGDEYKCNKCNYKTTWKNLLQTHMKIHSGDEYKCKECDYKTLWKSYLTSHMKIHTGDEYKCNECDYRTTWKYSLQTHMKIHKGDLYKCKECDYKAAQKGNLKIHMGSHTGEKYKCSECDYKTVRKYSLKIHMKIHTGDEYKCSECEYKSIWKHSLKTHMKIHLGDKYKCKECDYETVQKTCLTRHMKIHRGYEYKCNECDYKTTWKHSLGTHIMKIHKGDLYKCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-