Lyun015559.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002166.1:123442-125859[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.02 0.28 11.8 0.1 1 21 64 84 64 85 0.95
2 23 0.0026 0.037 14.6 2.1 1 23 139 161 139 161 0.98
3 23 0.48 6.8 7.5 4.3 1 23 166 188 166 188 0.98
4 23 0.025 0.36 11.5 4.3 1 23 193 215 193 215 0.98
5 23 0.0023 0.032 14.8 2.4 1 23 220 242 220 242 0.99
6 23 0.055 0.77 10.4 0.8 1 23 275 297 275 297 0.96
7 23 0.0017 0.024 15.2 2.5 1 23 302 324 302 324 0.99
8 23 0.0023 0.032 14.8 2.4 1 23 329 351 329 351 0.99
9 23 0.0063 0.089 13.4 0.7 1 23 356 378 356 378 0.98
10 23 0.04 0.57 10.9 1.0 1 23 383 405 383 405 0.98
11 23 0.0031 0.044 14.4 3.6 1 23 410 432 410 432 0.99
12 23 0.48 6.8 7.5 4.3 1 23 437 459 437 459 0.98
13 23 0.0088 0.12 12.9 4.2 1 23 464 486 464 486 0.98
14 23 0.0023 0.032 14.8 2.4 1 23 491 513 491 513 0.99
15 23 0.055 0.77 10.4 0.8 1 23 546 568 546 568 0.96
16 23 0.0017 0.024 15.2 2.5 1 23 573 595 573 595 0.99
17 23 0.00079 0.011 16.2 2.9 1 23 600 622 600 622 0.99
18 23 0.0063 0.089 13.4 0.7 1 23 627 649 627 649 0.98
19 23 0.04 0.57 10.9 1.0 1 23 654 676 654 676 0.98
20 23 0.027 0.38 11.4 1.8 1 23 681 703 681 703 0.98
21 23 0.0041 0.059 14.0 1.0 1 23 708 730 708 730 0.98
22 23 0.002 0.029 15.0 4.1 1 23 735 757 735 757 0.99
23 23 0.97 14 6.5 1.3 1 23 762 784 762 784 0.97

Sequence Information

Coding Sequence
ATGGACGAAAGTTATCCAATAAAATCAGAGGTGgttgtaaatgaaacattttccaattatggaaaatatgaagATTGCGGCAATGAAGAATTGGAAATGGAACCAGTAGATTTTGAAGAACCTTTTAAATGTGAGGTAGAGGATAATCTTATGGATCACATTAATAGATGTGACGTACTCACGTATCAATATATTtgcaatgaatgtaattttattacaacaaagaaagattctctaatagaacatttgaaaatcactgaaaacattcaatatttttgtaaagtgtGTGACCTTAAAACCATGTTGAGATGTTCAATAAGAGAGCATTCCAAGATTCATAACAAAGTTGCTCTTAGACATATTAAAAAACCACGACTTTTCTCTTTAGCAACGCAGTTAAGAAGTCCTGATGAATatagttgtaaagaatgtaattataaaacacagaGGAAAGAGATGCTAaggcaacatgtaaaaattcatattgaTGATcgatataagtgtaaggaatgtgattataaatcaaGGTGGAAACGGAGTCTAAGGGAACACGTAAAACATCATACTGGTGATGTATTTAAGTGCagtgaatgtgactttaaaacagtgaggaaacaCAGGCTAAATGAACATAGGAAAATTCATATTGGtggtgaatataagtgtaaggaatgtaactataaaacggtGAATAAATATagactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaacgaatgtatttacaaatcacCATGGAAACACAAACTAaaagaacatgtgaaaattcatactactGAAGCTGAATATAATTGTaaggagtgtgattataaaacattttggaGTCAGAATCTAAAGGTTCATATggaaattcatagtggtgatgaatataagtgtaaggaatgtgactataaaacagtgaggaaacaGAGGCTGAagcaacatgtgaaaattcatactggcgatgaatataagtgtaaggaatgtaactataaaacggtGAATAAATATagactaaaggaacatgtgaaaattcataatgactataaatatgaatgtaaggaatgtgattataaaacaagttGGAGTCGTAGTTTAAAGGctcatttgaaaattcattgtggtgatgaatataagtgtaaggagtgtgattataaaacagtgtggaaacagagtctaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaagaaatgtaattataaaacacagaGGAAAGAGATGCTAaggcaacatgtaaaaattcatattggtggtgaatataagtgtaaggaatgtgattataaatcaaGGTGGAAACGGAGTCTAAGGGAACACGTAAAACATCATACTGGTGATGTATTTAAGTGCagtgaatgtgactataaaacagtgaggaaacaCAGGCTAAATGAACATAGGAAAATTCATATTGGtggtgaatataagtgtaaggaatgtaactataaaacggtGAATAAATATagactaaaggaacatgtgaaaattcataccggtgatgaatataagtgtaacgaatgtatttacaaatcacCATGGAAACACAAACTAaaagaacatgtgaaaattcatactactGAAGCTGAATATAATTGTaaggagtgtgattataaaacattttggaGTCAGAATCTAAAGGTTCATATggaaattcatagtggtgatgaatataagtgtaaggaatgtgactataaaacagtgaggaaacaGAGGCTGAagcaacatgtgaaaattcatactggcgatgaatataagtgtaacgaatgtgactataaaacagtgagcaAATGTAGTCTAACggtacatttgaaaattcataatgactataaatatgaatgtaaggaatgtgattataaaacaagttGGAGTCGTAGTTTAAAGGctcatttgaaaattcattgtggtgatgaatataagtgtaaggagtgtgattataaaacagtgtggaaacagagtctaaaggaacatgtgaaaattcataccaaCGATGGGTATAAGTGtaagaaatgtaattataaaacagcatggaaacaaaatctaaaagtgcatgtcaaaattcatagtgacaataaatatgaatgtaaggattgtgattataaaacaagttGGAGACAGAGTCTAATgaatcatatgaaaattcatagtggtgatgaatataagtgtaaggaatgtgactataaaacaatgaggaaacatagtctaaaggaacatgtgaaaattcataccggtgatgaatataagtgtatgctatgtgactacaaaacagtatggaaatatagtctaaaggaacattccAAAATTCATACcaatgtttaa
Protein Sequence
MDESYPIKSEVVVNETFSNYGKYEDCGNEELEMEPVDFEEPFKCEVEDNLMDHINRCDVLTYQYICNECNFITTKKDSLIEHLKITENIQYFCKVCDLKTMLRCSIREHSKIHNKVALRHIKKPRLFSLATQLRSPDEYSCKECNYKTQRKEMLRQHVKIHIDDRYKCKECDYKSRWKRSLREHVKHHTGDVFKCSECDFKTVRKHRLNEHRKIHIGGEYKCKECNYKTVNKYRLKEHVKIHTGDEYKCNECIYKSPWKHKLKEHVKIHTTEAEYNCKECDYKTFWSQNLKVHMEIHSGDEYKCKECDYKTVRKQRLKQHVKIHTGDEYKCKECNYKTVNKYRLKEHVKIHNDYKYECKECDYKTSWSRSLKAHLKIHCGDEYKCKECDYKTVWKQSLKEHVKIHTGDEYKCKKCNYKTQRKEMLRQHVKIHIGGEYKCKECDYKSRWKRSLREHVKHHTGDVFKCSECDYKTVRKHRLNEHRKIHIGGEYKCKECNYKTVNKYRLKEHVKIHTGDEYKCNECIYKSPWKHKLKEHVKIHTTEAEYNCKECDYKTFWSQNLKVHMEIHSGDEYKCKECDYKTVRKQRLKQHVKIHTGDEYKCNECDYKTVSKCSLTVHLKIHNDYKYECKECDYKTSWSRSLKAHLKIHCGDEYKCKECDYKTVWKQSLKEHVKIHTNDGYKCKKCNYKTAWKQNLKVHVKIHSDNKYECKDCDYKTSWRQSLMNHMKIHSGDEYKCKECDYKTMRKHSLKEHVKIHTGDEYKCMLCDYKTVWKYSLKEHSKIHTNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-